AMCG00001838 (pde10a)


Basic Information

Item Value
gene id AMCG00001838
gene name pde10a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 17144241 ~ 17160791 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001838
GATGACTCCATCGTAAAAGAGGTCAGCAGGTATCAGGACACAAACATGCAAGGTGTGGTGTATGAGCTGAACAGCTACATGGAGCAGCGGCTGGACACGGGGGGAGACAACAAACTACTGCTCTATGAGTTGTGTAACATCATTAAAACAGCTACTAAAGCGGACGGAATCGCACTTTACTTTCTAGGAGAATGCAACAATAGTCTGTGTCAGTTCACGCCCACGGGTGCGAAGGAGGGGCTGCCCCGGCTCATCCCTTCAGGGCCGATTGCTTTCGGGACGACCATCGCAGCCCATGTGGCCAAGAGCAGGAAAACGCTGCTGGTGGAGGACATACTGGGGGACGAGCGGTTCCCCAGAGGCACAGGGCAGGACTCAGGGACGCGCATTCACTCTGTCCTGTGTCTCCCGATCCTCACGGCGATCGGAGACCTCATCGGCATCCTGGAGCTCCATCGCAATGGGGGGAAGGAGCCCTTCAGCCTCAGTCACCAGGAGgTTGCCACTGCTAATTTAGCCTGGGCTTCTGTGGCAATTCACCAGGTTCAGGTGTGCAGGGGTCTCGCCAAACAGACGGAACTGAACGACTTCCTGCTCGACGTTTCAAAgaCATACTTTGATAACATTGTGGCAATAGATTCTCTACTTGAACATATAATGATATATGCAAAAAACCTGGTGAACGCCGACCGCTGTGCGCTCTTTCAGGTTGACCACAATAACAAGGAGCTGTACTCGGACTTGTTCGATATCGGGGAGGAGAACGAAGGGAAGCCAGTCTTTAGGAAAACCAAAGAAATTAGGTTTTCTATAGAGAAAGGAATAGCGGGGCAGGTGGCAAGAACAGGAGAGGTCCTTAATATTCCTGATGCCTATGCAGACCCACGCTTTAACAGAGAAGTGGACCTTTACACAGGCTATACCACCCGGAACATCCTATGCATGCCCATCGTCAGCCGGGGGACGGTGATCGGTGTCGTACAAATGGTCAACAAGTTAAGCGGAAGTGCCTTCACTAAAACCGACGAGAACAACTTCAAAATGTTTGCAGTCTTCTGTGCTTTGGCCTTACACTGTGCTAATATGTACCACAGGATACGACATTCGGAGTGCATCTACCGCGTGACCATGGAGAAGCTCTCGTACCACAGCATCTGCACATCGGAGGAGTGGAAGCACCTCACGCAGCTGACGCTCCCAACACCCATCTACAAGGAGATCGAGCTGTTTCACTTTGATATCAGCCCCTTTGAAGAGATCTGGCCGGCGATTTTTGTGTATATGGTCCATAATTCGTGTGGCAAAAACAGCTTTGAGCTCGAGAAGCTGTGCCGCTTCACCATGTCCGTGAGGAAGAACTACCGGCGCGTGCCGTACCACAACTGGAAACACGCCGTCACTGTGGTGCACTGCATGTACGCCATCCTGCAGAAAAACAAGGACATCTTCACAGAGTTGGAACGGAAGGGCCTCCTGGTTGCCTGTCTGTGTCACGACCTGGACCACCGAGGCTACAGTAACACCTACCTGCAGAAGTTCGACCACCCCCTAGCGGCGCTCTACTCCACTTCCACCATGGAGCAGCACCACTTTTCCCAGACGGTCTCCATCCTGCAGCTGGAAGGGCACAATATTTTCTCCAACCTGAATTCCAGCGAGTACGAGCAGGTGCTGGAGATCATCCGCAAGGCCATCATCGCCACAGACCTGGCGCTGTACTTCGGCAACCGGAAGCAGCTGGTGGAGTTGCTGACGACCGGAGCGCTGGACCTCAACAACCACGCACACCGGGACCGCGTGATCGGTCTGATGATGACCTCTTGTGACCTGTGCTCGGTAACGAAGCTGTGGCCGGTGACCCGACTGACTGCCAATGACATATATGCAGAATTCTGGGCTGAGGGAGACGAAATGAAAAAGATTGGCATGCAACCGATCCCTATGATGGATAGAGATAAGAAAGACGAAGTTCCCCAGGGTCAGGTGGGCTTCTATAATGCTGTAGCTATCCCATGTTACACCACACTGACGGAGTTATTTCCTGCTTCAAACCCACTTCTGAGAGCATGCAGgGAAAACCTCGCCCAATGGGAAAAGCTGGTTGAAGGAGAGGACCCGTCCAAGTGGGCCCCCTCTCAGTCCGATACCTCAGAGTCTGCCGAGACCATTCCTGTGAAAATAGACAATTGACTAGAGGAGGGCTTGGTACAGAGGCGCATTTCCTGCCAGAGACTCTGCAACTCCAGCGAACGGCCGATTTCCTGTGAAGGCAGGGAGTGGCGCAGTGGCTGAGAAGGTGATTTAGCGGGAGGACATTAAAACCATACAGTTACCTCATTGGGTGATGGAGCTCTTTACACTAAAGGCGTCACCGGGAACAGTGACCTTAGGGACTTCAGCTGAAGGGTGCGGTGGATTGTGATCGGATCACCTGAACCACACCGCTTGGGAGTCTGTTTTTAGAGTGGACTTAaatttgagttattttttagttttaaccGATTTTCCTTTGCGGTCTGTATTTTTGCTGAGGCCTTAAATTCCAAACCCTGACCATTTCCCTTGATTTTAAATCAGACTTTTTGACATTCTGGGGGTACAACCTATCGAAATGGTACTTTTCACGGGACGGGTGGATTATCTGTGCATTGGGATGTTGAGCCGGGATGTTTATGGAAGATTCATGCTGAGACTAAACAAGGTTTGTTGTCTTGATGATGCATCTGTTAtcaaaagaataatacaataacagtaCTCGAATACAGCTCTGCAAAACATTAAGAggccactccaagttcagaaatcaatgttaagtggtctcatttttttcccagagctgtatatttatcattcatacatacatacatacatacacaccaacCTCCCAGGTGCAAGGTATGGCAAATGAGTTTTTCCCGAGATAAATGCTCTCCGCTGTAGTCCTAAAGATAGGCAGCGTTCCTTCACAACATCTCTTTGCCGTGCGTTCTGGGAACCGACATGTTTTCAGCTTTATAGACCATAACAAACGAGTAATCATGGCAGAGGTCACCACATAGAGCTCACCAGACACTTCAGCAGCTCTATAAACCAGGCAGCCCCAACACAGTCGTGTGCACTTTGGCTCCGTAAGGGGCTTTCGAAGCCATAATAGATGGAACCGAAAAGGAAAATTGAGGAAAAAGTCCCagttagttttaatttaaaaagcataccTATTGATTGAAATGAGACACCATAAAATTAAGTATTTGGACCCGACTTAACCTCCCCCCAAATTATGGACTGTTTTTACAATATCCAGTGAATTGTTGCTAAAGGGCTACAACTGAAACTGACAGCGAAGGGAGTTGTTTTGCAGATCACGGTTTAGCTGCTCGGATCTTGCCCTGTCCACAGTGGTAACACTACCCCCCTCCCCGTGTCTCTTGATTTGAAACCTCCAGCCCAAATACTTTTTGCCTATTTAATTCCCTGCTCTACATTCGTGTCAGCCAAGCAGAGCGAACTGCGACAGGCTGTAATTACGCCACAGAAAAATATCAGCTGACACGCCTTGAATTATTTTATCACATAAAAGGCTCTTAAAAGAAATGTGGCATGCCCTAATTTGATGTCCTTTTTTCTGAGATAAAACTTACAGGGGTGAGAATGTTTAAGAGCagtatgttgtttttcagaGCCTGTGCTATTTAAGTATCTGTAGATTTCTAAAGTGGAAACTTGTGGCGTTTCCCGGTGTTGAAGGACCTCGTAAACCAAGGGACAGACTGCGTTGACCGTTTATTGCCAACCGAGGATTACTGGGTGGAAAATGTTCTTTTGGTTTCCATCAAGACGTGTGGGAGATCGCACTTATCGTGTTTTGCCATTTATATTTGAAGAATAACAAACTCAGATTTCCTTGCCTAGTTCAAATTTTGCCCAATTctcgaatgcaaaatgtaagcCTCCAGCGAGCCCAATGAAGCCATATAATTTACCCGGCCTAACCTGGGTAGCTTCAATTCATACGGACTCTGTGCGTTTCCATCTACTAACCAAATGGTTTCTCAGTTATGGTAGAAAGATCAGAAACAGATCTGACTGGCATTCTGTGAGCTAGAGAAGTGCTTTCATATCTGTCTCCGTGTCAGGACTAGTTCTTAGAAACGTCTTTAACAGCAGATGAAATGTCACATGAAGTAAAAATGCCTCCGATGTGAATAAGCTAGAGTCTAAAGCATGAATGTAGACAATACGTGTTTTGAATTCAATTTCCAATGTGGACTTTCTATAACAGTGGTTGCACCTTAAGTTGATGAAAATATTACCTATATACCTAAAACAGTTGGTAGACCATGGCTTTAATACTAGACTTCAGTAGTAAGAGCGATGGGTAGACTTTATTGGTGCTAATTTAGGATggttatcttgcactttttgGCCCAGGTTTAGTTCCCTCTGTCCTAAACCTGGGTTTCAGAGTCTTTATTGAAAGGTTTCCTGCCTTTTGTAAAGTCTGCTTGTTTGGCGCAATTTTTTTTGCTTCGTCTGCACTATgtttataggttttttttttttttattagttttaaattcaaattaacttatatttttaatacgAAAGAAAATGTTGGCCTTTTTTATACAAGTGTGTAAGATGTACAGAGCAGAACTGTATTTAATGTGAGATAGTAACCCACATTTTCAATGAGAAATGTCTATGTGATCATCAAGAACCGCAGaaatttcattaaatatttattccaaaCGATTAGTCAgcttcattaatgcatttcatgaaGAGTTTCATAACGAATATGGTAGCTCTCTGTCTTCACTACAAATCACAAACATTGAACCTTTTATTTCAGGTTATGTTTGtagtttgtgctttttttttctgcagcattgTCTACATAGGACATGGAACTACTGTCACTTTTATGTTAATGCTAAcctattaaaacaaaagctttgGTATACATTGGTAATGTCATATagtaaaaataatcaatttaaacacCATGCAATGCACTGCGAATTATAACCCAAGCCTGGGAACATGCAAAGGCTGGTCAAGAACAACTTGCTCATTCCTGTTGACCAGGCGGTGCCCGAGAGAAGACTTCAGTGGCTCTTACAAGCAATTCCAGCTATGTTCCTCCATGTCCGATACCGTATGAATAGAGCTGCATCTGTAACAAAGTGACTGGTCCAGGCTGTGCTGACCGGCCTGCGGGGGATCGAGCACTGTGGCCCGGCTTTAGCCTGGCGCTGACCCCGCCACGGCCACCGGAGAGGACCGCAGCGATCCTGGAGACGGGTTTCACACCACACCCGGGGGTTGAAGGTGTCAGTATGTGTGCCCTGTGCTATGACGCCCTGCTGTTTGTGCTGGGTCGTTGTGCGTCTATTACATGAACAAACCAGGGCTGGGGACAATGCTCAGAAACCGCGAGGTGAggatttgtcatttaaaaacatttttggacCCATTCTTACTTGCACACCTTTGCGCGAGAACCCTTTCAATCGTCCTATTGCAAATCTGAAATCGCATGTTGAGGAAGGGTggaatggttttctttttaagggaAGCTCTTGGTTTAGCAAACGTTTTCAGGCCAGTCAAGATGAAGGGGATGAATCTGCGAATATTTGCCCTTTAATGTGTGAAcctctttattttcaaatcaagcCAGGGCTGTTCTATTGTTTGTGCTTAAAACCCCACAGCCCTTCTAGTTTCCATTTAACTCCACTATGGATGCAGTTCTGCTGTCAGACCCCTCTTGTGTGCAGCAAATTCCTTATGAAGACAAACCACGAGAGAAGCAAGGACCTCGAAGCCCATCACCTGCGAAGTGCTGGGACGGTTTTCAAAGACACGGCTGTGCGCATGCGTTTCCCGCCCCTGCCAAAAACAAAACGGAACGTTCTATGCCTGTCCAACGTTCTAGAaccagtttttaaaaatacatttaattgaagtgCGATGTACAGCGAGGATGTTCACGCGTTGCTTCAACTGGGACCCAAGCAGCACATGCATAGTTAACATGTCCAGAAACTGCGTAAAATATGGGCAGTCATTCCTAGATTGGATCAATTATTGTTCTGCTCTGTTACACTAACAGACCATTACTTTACTAATACTTTCAGATCTGAACAAAGCTAATAGTGAGAGTCAGTGACGTAATTTACTGACGGTAATCTCAGATGTGATTTAAGAACAAATCAGTATCTTGTGTGTAAACggagaacaaatacataattgtatgtCCAAagcttgtgtttctttttccccccccacacattGATTCAGGGTAGCATACCAAGTGCTTGGttactaatttaaataaatatataagctgtatttttttggttttgttttgtataaaatgtatatgcaagTGCAATAATTTTGATCTTAAAATcgcatttataaattataaatattgtatatgttgttttttccatgtaTTCATTTGCagtctttgtatttaaaatactattatgTTTGTACTATAGCCCATCGAGACCATTTATTATACggttgtaaataaatacacaaaacaaa

Function

symbol description
pde10a Predicted to enable cGMP-stimulated cyclic-nucleotide phosphodiesterase activity. Predicted to be involved in negative regulation of cGMP-mediated signaling and signal transduction. Is expressed in chordo neural hinge; epidermis; nervous system; and notochord. Orthologous to human PDE10A (phosphodiesterase 10A).

NR:

description
PREDICTED: cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A isoform X2

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG:

id description
K18438 PDE10; cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001838 True 6564 mRNA 0.45 20 17144241 17160791

Neighbor

gene id symbol gene type direction distance location
AMCG00001839 t,LOC102777203 coding upstream 45908 17094564 ~ 17098333 (+)
AMCG00001837 NA coding upstream 51643 17074216 ~ 17092598 (+)
AMCG00001836 NA coding upstream 73583 17069882 ~ 17070658 (+)
AMCG00001831 sft2d1 coding upstream 77740 17055481 ~ 17066501 (+)
AMCG00001830 fbln7,LOC106589727 coding upstream 135772 16995655 ~ 17008469 (+)
AMCG00001840 NA coding downstream 16424 17177215 ~ 17179413 (+)
AMCG00001856 park2 coding downstream 357913 17518704 ~ 17520528 (+)
AMCG00001853 NA coding downstream 366950 17527741 ~ 17531215 (+)
AMCG00001854 NA coding downstream 371660 17532451 ~ 17543361 (+)
AMCG00001852 ubr2 coding downstream 382961 17543752 ~ 17568195 (+)
G160649 NA non-coding upstream 234208 16905249 ~ 16910033 (+)
G160648 NA non-coding upstream 241801 16899895 ~ 16902440 (+)
G160542 tubb4b,LOC106575097,LOC105893757 non-coding upstream 866187 16276806 ~ 16278054 (+)
G160464 NA non-coding upstream 1024975 16117205 ~ 16119266 (+)
G160463 NA non-coding upstream 1029542 16114344 ~ 16114699 (+)
G160782 NA non-coding downstream 247466 17408257 ~ 17408616 (+)
G160869 NA non-coding downstream 637408 17798199 ~ 17804178 (+)
G160895 NA non-coding downstream 699371 17860162 ~ 17861427 (+)
G160910 NA non-coding downstream 756004 17916795 ~ 17917054 (+)
G160939 NA non-coding downstream 863405 18024196 ~ 18029816 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other upstream 766381 16237262 ~ 16377860 (+)
AMCG00001762 NA other upstream 1705210 15432337 ~ 15439031 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other upstream 1809661 15331620 ~ 15334580 (+)
G160026 NA other upstream 2874051 14269615 ~ 14270190 (+)
AMCG00001691 NA other upstream 4810541 12329979 ~ 12333700 (+)
AMCG00001841 NA other downstream 18803 17179594 ~ 17182601 (+)
AMCG00001846 NA other downstream 256560 17417351 ~ 17462934 (+)
AMCG00001881 NA other downstream 1027111 18187902 ~ 18209391 (+)
AMCG00001883 NA other downstream 1049218 18210009 ~ 18217138 (+)
AMCG00001880 NA other downstream 1503204 18663995 ~ 18673815 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000005_01587815_01629740 PDE10A coding CI01000005 null 1587698 ~ 1629870 (+)