G160939


Basic Information

Item Value
gene id G160939
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 18024196 ~ 18029816 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU202592
GCCGAGTTGCACAAGGGTGGGCTGTAATtcttcagaaaagaaaatgaaagaaggaACTGACACACGGGTTGTGAAAAAGTTTGCAAATAAATTCTTCCTCAAAGCCAGAGCATAAATAAAGCGCGGAAGTGCAGCAGTACTGCAGAACAGACGACATCACTCCAAGTTTCATCTATCCAGAGACACGCTGGCCGCACAATGGCAGAGGGAAAGAAAGAGTATCAAACGGGAGACCTGATTTCCATTAACCGAGGACCATATCATCACTGGGCACTTTTTTGGAAACATGACAATGGAAAAGATTATGTCGCCCATGTTTCAGGAGGTACAACCCatgCAGATACAGAGTGAATTTAAGGTGGATGAACTTCAAAAGGTGGTTAATGGCAGTCCATTCTCCGTGAATGAAGAACTGACGCATCTCAAACCACGAAGCCCTGAGGAAATTGGAAAAGTAATACAGAACACGATTGGCCAAAAAATATCCTATGACCCATTGGGAAATAATTGTCAACACATTGCTTCAAACATTCGCTTTGGCCAGAGAAAATCTCCTGaggtaatattt

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
TU202592 True 568 lncRNA 0.43 5 18024196 18029816

Neighbor

gene id symbol gene type direction distance location
AMCG00001868 NA coding upstream 83406 17937744 ~ 17940790 (+)
AMCG00001866 LOC107582777,LOC108273982,LOC107698822 coding upstream 92917 17885198 ~ 17931279 (+)
AMCG00001860 NA coding upstream 224843 17794741 ~ 17799353 (+)
AMCG00001861 NA coding upstream 235409 17787746 ~ 17788787 (+)
AMCG00001859 eml4,LOC107698167,LOC107590012,LOC107695036,LOC107739484 coding upstream 237298 17783849 ~ 17786898 (+)
AMCG00001882 abcg8 coding downstream 194238 18224054 ~ 18230265 (+)
AMCG00001875 NA coding downstream 257896 18287712 ~ 18294690 (+)
AMCG00001872 LOC108430462,LOC108273990,LOC107582773,LOC107749348,LOC107698817 coding downstream 298675 18328491 ~ 18340877 (+)
AMCG00001873 NA coding downstream 317980 18347796 ~ 18358955 (+)
AMCG00001874 NA coding downstream 334486 18364302 ~ 18367236 (+)
G160910 NA non-coding upstream 107142 17916795 ~ 17917054 (+)
G160895 NA non-coding upstream 162769 17860162 ~ 17861427 (+)
G160869 NA non-coding upstream 220018 17798199 ~ 17804178 (+)
G160782 NA non-coding upstream 615580 17408257 ~ 17408616 (+)
G160649 NA non-coding upstream 1114163 16905249 ~ 16910033 (+)
G160943 NA non-coding downstream 8888 18038704 ~ 18039374 (+)
G160985 NA non-coding downstream 188948 18218764 ~ 18219031 (+)
G161170 NA non-coding downstream 893633 18923449 ~ 18923672 (+)
G161282 NA non-coding downstream 1425272 19455088 ~ 19457752 (+)
G161285 NA non-coding downstream 1478427 19508243 ~ 19508522 (+)
AMCG00001846 NA other upstream 561262 17417351 ~ 17462934 (+)
AMCG00001841 NA other upstream 841595 17179594 ~ 17182601 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other upstream 1646336 16237262 ~ 16377860 (+)
AMCG00001762 NA other upstream 2585165 15432337 ~ 15439031 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other upstream 2689616 15331620 ~ 15334580 (+)
AMCG00001881 NA other downstream 158086 18187902 ~ 18209391 (+)
AMCG00001883 NA other downstream 180193 18210009 ~ 18217138 (+)
AMCG00001880 NA other downstream 634179 18663995 ~ 18673815 (+)
AMCG00001889 cript,LOC107582781,LOC107728714 other downstream 869521 18899337 ~ 18901718 (+)

Expression


Co-expression Network