CI01000005_01587815_01629740 (PDE10A)


Basic Information

Item Value
gene id CI01000005_01587815_01629740
gene name PDE10A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 1587698 ~ 1629870 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_01587815_01629740.mRNA
ATTTAAATGAGCAGAAGCAATGACCTGTTAATGAGATCATTGCCACTTTAATGGGCTAGGGTTAGGGTTAGGAGCACACACACTATGCTCTGAGACCCGCTGATTTAGGGGACAGAGATGAAGAAGTTAAATGGGGCCGGCAGAGAAGGACGGGAACAGCAGAACACGATGGAGACACAGTACCAGGACACGAATATGCAGAGTGTTGTATATGAGCTCAACAGCTACATGGAGCAGCGGCTGGACACTGGAGGAGACAACAAACTACTGCTCTATGAGTTGTGCAACATCATCAAAACAGCCACAAAAGCTGATGGATTTGCACTTTACTTCCTTGGAGAATGCAACAATAGTTTATGTTTGTTCACTCCGACGGGGGCAAAAGAGGGGCTTCCTGGGCTCATCCCCTCTGGTCCCATCACGTTTGGGACCACCATCGCCGCTCACGTTGCAAAGACACGCAAGACACTACTAGTAGAGGACATCATGGGGGACGAGAGATTCCCTCATGGCACAGGGCAGGACTCAGGGATCCGTGTACATTCTGTTTTGTGTCTACCCATCCTCACCGCCATCGGAGACCTCATTGCTATCCTGGAGCTGCACCGCCACTTGGGCAGAGAGCCCTTCAACCTCAGCCACCAGGAGGTTGCAACAGCAAATTTGGCCTGGGCATCTGTAGCCATACACCAAGTTCAGGTCTGCAGAGGTCTCGCCAAACAGACGGAACTCAACGACTTTCTCCTAGATGTGTCAAAAACGTACTTTGACAACATAGTGGCAATAGATTCTCTACTTGAACATATCATGATATATGCAAAAAACCTGGTTAATGCGGACAGATGTGCGCTTTTCCAGGTGGATCACAATAACAAAGAGCTGTACTCTGACTTGTTTGATATCGGGGAGGAGAATGAAGGGAAACCCGTCTTTAGGAAAACCAAAGAAATTAGGTTTTCTATAGAGAAAGGAATAGCAGGTCAGGTGGCACGAACGGGAGAAGTTTTGAATATTCCGGATGCCTATGCAGACCCCCGTTTCAACAGAGAAGTAGATCTCTATACCGGCTACACAACGCGGAATATCCTGTGCATGCCCATAGTCAGCCGCGGGACTGTGATTGGTGTTGTACAAATGGTGAACAAGCTGGGAGGAAGTGCCTTCACTAAAACTGATGAGAACAACTTTAAGATGTTCGCCGTCTTCTGTGCTTTGGCCTTACACTGTGCAAATATGTATCACCGGATAAGACATTCAGAGTGCATTTACCGGGTGACAATGGAGAAGCTTTCGTACCACAGCATCTGCACATCAGAGGAGTGGAAGACCCTCACACAACTCTCCCTCCCTACAGCCATATATAAAGAGATTGAACTGTTTCATTTTGACATTGCCCCTTTTGAGGAAATGTGGCCTGCAATATTTGTATACATGGTTCACAATTCTTGTGGGAAAAACAGCTTTGAGCAGGAGAAACTGTGTCGCTTCACTATGTCAGTGCGGAAAAATTACAGACGAGTTCCATACCACAACTGGAAACACGCTGTGACGGTGGCACACTGCATGTACGCCATTCTGCAAAAAACCACTGGGATATTCACAGAGCTTGAGAGGAAAGGGTTGCTGATTGCCTGCTTGTGTCATGACCTGGACCACCGCGGCTACAGTAACAGTTATCTGCAGAAGTTTGACCATCCGCTGGCCGCCCTATATTCCACATCCACAATGGAACAGCATCATTTTTCACAGACAGTGTCCATCCTGCAGCTGGAAGGGCACAATATTTTCTCCAACCTGACTTCCAGTGAGTATGAGCAGGTGCTGGAGATCATCAGGAAGGCCATCATTGCTACAGACCTCGCTCTGTACTTCGGCAACCGCAAGCAACTGGCTGAACTGCTGGCCACAGGGGCGCTGGACCTGAACAACCGTGCTCACAGAGACCGTGTGATTGGTCTGATGATGACTGCCTGTGATCTCTGCTCTGTTACCAAACTATGGCCTGTCACACGACTCACAGCCAATGACATCTATGCTGAGTTCTGGGCTGAGGGGGATGAAATGAAGAAGATTGGAATGCAGCCCATCCCCATGATGGACAGGGATAAAAAGCATGAGGTTCCCCAGGGACAGGTGGGATTTTACAATGCAGTGGCAATTCCCTGCTACACCACCCTGTCAGAGCTGTTTCCTCCCTCCAGTCCTCTGCTAACAGCTTGCAGGGAAAACCTGGCCCAATGGGAACGAATTGTTCGAGGAGAAGACATCTCTACATGGGCTTCCACTGAGGAGGCCGAATTGAGCGAGACATCAGATAGTGGACCAGTGAAAGTGGACAACTGAATCTGTGGCACCTATCCCACAACACCACCTACACCCTGCCAGAGACGCTGGACTTCCTGTGGACAGTCCCACATCCTGCAGAGACAGGAGGAAGTGCAGAGGGCAGGCGGGGACGGATACATTCAGAAAA

Function

symbol description
pde10a Predicted to enable cGMP-stimulated cyclic-nucleotide phosphodiesterase activity. Predicted to be involved in negative regulation of cGMP-mediated signaling and signal transduction. Is expressed in chordo neural hinge; epidermis; nervous system; and notochord. Orthologous to human PDE10A (phosphodiesterase 10A).

GO:

id name namespace
GO:0052715 mannosyl-diinositol phosphorylceramide phospholipase activity molecular_function

KEGG:

id description
K18438 PDE10; cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_01587815_01629740.mRNA True 2473 mRNA 0.49 20 1587698 1629870

Neighbor

gene id symbol gene type direction distance location
CI01000005_01567956_01569421 PDE10A coding upstream 17559 1567956 ~ 1570139 (+)
CI01000005_01460222_01467970 TB, T coding upstream 119706 1460222 ~ 1467992 (+)
CI01000005_01431961_01432725 PRR18 coding upstream 154513 1431788 ~ 1433185 (+)
CI01000005_01398585_01411469 SFT2D1 coding upstream 176162 1398174 ~ 1411536 (+)
CI01000005_01373895_01396081 RPS6KA2 coding upstream 190801 1373148 ~ 1396897 (+)
CI01000005_01641148_01646936 PLA2G12B coding downstream 11278 1641148 ~ 1647378 (+)
CI01000005_01748068_01748568 NA coding downstream 116248 1746118 ~ 1748654 (+)
CI01000005_01795371_01878902 MICU1 coding downstream 165501 1795371 ~ 1878956 (+)
CI01000005_01902623_01902991 MRPS6 coding downstream 272753 1902623 ~ 1903066 (+)
CI01000005_01909422_01922476 PSAP coding downstream 278872 1908742 ~ 1922591 (+)
G36270 NA non-coding upstream 284698 1302764 ~ 1303000 (+)
G36244 NA non-coding upstream 363088 1223766 ~ 1224610 (+)
G36196 NA non-coding upstream 369749 1217616 ~ 1217949 (+)
G36194 NA non-coding upstream 374275 1212900 ~ 1213423 (+)
G36163 NA non-coding upstream 408869 1178616 ~ 1178829 (+)
G36290 NA non-coding downstream 29175 1659045 ~ 1659269 (+)
G36294 NA non-coding downstream 36015 1665885 ~ 1666118 (+)
G36339 NA non-coding downstream 94499 1724369 ~ 1727277 (+)
G36361 NA non-coding downstream 137553 1767423 ~ 1767898 (+)
G36362 NA non-coding downstream 138067 1767937 ~ 1768534 (+)
G36223 NA other upstream 49894 1503143 ~ 1537804 (+)
G35533 NA other upstream 1063917 491908 ~ 523781 (+)
G36291 NA other downstream 29863 1659733 ~ 1661032 (+)
G37392 NA other downstream 2092874 3722744 ~ 3723503 (+)
CI01000005_04735429_04736817 COX20 other downstream 3105476 4735346 ~ 4737082 (+)
G39930 NA other downstream 5367674 6997544 ~ 6998340 (+)
CI01000005_07600541_07600974 NA other downstream 5968119 7600541 ~ 7602964 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005743 pde10a coding NC_007124.7 CM002897.2 4505079 ~ 4620715 (+)
bowfin (Amia calva) AMCG00001838 pde10a coding CM030143.1 CM030143.1 17144241 ~ 17160791 (+)