CI01000005_01641148_01646936 (PLA2G12B)


Basic Information

Item Value
gene id CI01000005_01641148_01646936
gene name PLA2G12B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 1641148 ~ 1647378 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_01641148_01646936.mRNA
GTTTGGCTGCCACACTTATCCAGGCCTCTGTTGATGGGGAGGCAGTGGATTCGCCTGCTGACGGATCCGTTTTACCTGAAGCTCAGGCTGGTGATACCCAAGATGTTCCGCTTAATGAGGAGTACCAGGCAGAACACATCTTGATGGCAGATGCCCCTGTTGAGGGAAAACCTGCAGAGACCCAGAGTACCACTCAAGAATCTGAGGATGAGTCGGACTGGGGCTTCGGTTCTATCAGAGGGAGTTTCCAGGCAGTGAATGGCTATTTTGACTCTATTCTGGAGCTGATGGGAGGCCGGGATGGTGTATGTCAGTACCGCTGTAGACATGGTAAAGCTCCTCAGCCTCGTGTTGGCTATCAGATGCCAGAACCTGATGGTTGTAGCACCTCACTTCTTGGCTTCCAGTTTGATATGGGTGTTCCAGCCATGACCAAATGTTGTAATCAGCTAGACATTTGCTATGACACCTGTGGCTCTAACAAGTACCGCTGTGACACCAAATTCCGCTGGTGCCTCCATAGCATCTGTGGTGACCTGAAGAAGAGCCTGGGACTCATGTCAAAGGTTGAAGCATGTGAGACCTTTGCGGACACTATGTATAACACCGTGTGGACTTTGGGCTGCAGGCCCTTCATGAACGGCCAGAGGGCATCCTGCTATTGTGAAGGAGAAGAGAAGGATGAGCTGTGAAGACCTACAAACCACAAAAACACACCACAATCAACACACATAAACACATTAAAGGTTAAAACTACTACACAATGGGTCAGTATTACGATGAATATCATTAAAACACATCAAGGTCACATTTCACCACAAAAATTCAAAGAAACAATTAGGCACATTTTGATCCAAAATTCGAATTACGACAATGTATCACAGTGGTGACAGTTAATGGATTCTGATTAGTCTAATTAGTCATTAGTGTAGTATCATAATTTTGTGTCGTATAAATAATTATGTATCTTTTTTTCTTTGCATTGCAGTAAGAGATTTTTTTTTTTTTTTACTTTTTGGTCCTAAAAATAGGCACATTTTATATTTTTGGGGTGAAATATGACCATCACATGTTCTTGACGTGTTCATGAGATTCACCCAGTAACCCTGGTGCTAGTGGATCCAGTTTAGTTAA

Function

symbol description
pla2g12b Predicted to enable calcium ion binding activity and phospholipase A2 activity. Predicted to be involved in cholesterol homeostasis and triglyceride homeostasis. Predicted to act upstream of or within arachidonic acid secretion; lipid catabolic process; and phospholipid metabolic process. Predicted to be located in extracellular region. Is expressed in caudal fin skeleton and yolk syncytial layer. Orthologous to human PLA2G12B (phospholipase A2 group XIIB).

NR:

description
Phospholipase A2, group XIIB

GO:

id name namespace
GO:0004623 phospholipase A2 activity molecular_function

KEGG:

id description
K01047 PLA2G, SPLA2; secretory phospholipase A2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_01641148_01646936.mRNA True 1134 mRNA 0.44 4 1641148 1647378

Neighbor

gene id symbol gene type direction distance location
CI01000005_01587815_01629740 PDE10A coding upstream 11278 1587698 ~ 1629870 (+)
CI01000005_01567956_01569421 PDE10A coding upstream 71009 1567956 ~ 1570139 (+)
CI01000005_01460222_01467970 TB, T coding upstream 173156 1460222 ~ 1467992 (+)
CI01000005_01431961_01432725 PRR18 coding upstream 207963 1431788 ~ 1433185 (+)
CI01000005_01398585_01411469 SFT2D1 coding upstream 229612 1398174 ~ 1411536 (+)
CI01000005_01748068_01748568 NA coding downstream 98740 1746118 ~ 1748654 (+)
CI01000005_01795371_01878902 MICU1 coding downstream 147993 1795371 ~ 1878956 (+)
CI01000005_01902623_01902991 MRPS6 coding downstream 255245 1902623 ~ 1903066 (+)
CI01000005_01909422_01922476 PSAP coding downstream 261364 1908742 ~ 1922591 (+)
CI01000005_01966840_01968600 C1D coding downstream 319181 1966559 ~ 1968954 (+)
G36270 NA non-coding upstream 338148 1302764 ~ 1303000 (+)
G36244 NA non-coding upstream 416538 1223766 ~ 1224610 (+)
G36196 NA non-coding upstream 423199 1217616 ~ 1217949 (+)
G36194 NA non-coding upstream 427725 1212900 ~ 1213423 (+)
G36163 NA non-coding upstream 462319 1178616 ~ 1178829 (+)
G36290 NA non-coding downstream 11667 1659045 ~ 1659269 (+)
G36294 NA non-coding downstream 18507 1665885 ~ 1666118 (+)
G36339 NA non-coding downstream 76991 1724369 ~ 1727277 (+)
G36361 NA non-coding downstream 120045 1767423 ~ 1767898 (+)
G36362 NA non-coding downstream 120559 1767937 ~ 1768534 (+)
G36223 NA other upstream 103344 1503143 ~ 1537804 (+)
G35533 NA other upstream 1117367 491908 ~ 523781 (+)
G36291 NA other downstream 12355 1659733 ~ 1661032 (+)
G37392 NA other downstream 2075366 3722744 ~ 3723503 (+)
CI01000005_04735429_04736817 COX20 other downstream 3087968 4735346 ~ 4737082 (+)
G39930 NA other downstream 5350166 6997544 ~ 6998340 (+)
CI01000005_07600541_07600974 NA other downstream 5950611 7600541 ~ 7602964 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location