G37282


Basic Information

Item Value
gene id G37282
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 3477220 ~ 3479704 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU42316
TTATCAGGAAATTTTAATTCTGAAGTGAACTAATCCTTTAAAGCTAGGTTTAGAGATAGGTTTAGGGTTAGTACTTGGTGATTACCCAGTTATTGTAATTGTTATAATAAATACATAGTATGTCCATGCGCAACAGGACTTTAAAATAAAGTGCTACCAGGTTTGATTTAGTGTTAGTTACTTGTAACTATGCATAATTTACTGTTATTACTATACTAAGTACATGTAGTTATGTGTAAACTATGTCACTTTAAAATAAAGTGTCACCAAGTTTTTTTGCAGTGAATATAATTGTACCATACTGACTTTACAATGCACTAAACTTCAACATAAAGTGCAACTTAATTCATTCAAGTACTGCGAGCAAAATACCCAGAATTCTGAAGGATGTGTCAAGACTGAAGGCAACAAATACACTTCGACTCCCGAGTCTGTTTGACAGTATCGTGTAATACTGGGTTGGAGCGTTGAGCGGCCGAAACAGGAAGGCAGGTGTAGGCTGGTGATACGTCAGTTATGTGGTTCTGGAAGGGACAGCTGTGCGTACTGACCTGGGCTGTGTTTCCCAAAAGCATCGTAAGTAGATCATAGAGACCATTATGGGTCTGCAACAGTTTACTGTCAGGGATTTGATGTGTCGTGCCACATCCAGTGTAGACAGCATCACTGTTTATAATGGGTTCTACTGGCTTTTATCACATCGCTTCTCGCCGCTCAAGTCCGGTGTACACAATGCTGTTTGGGAAATGCAGCCCTGGTCTGATCATTCGCCACTGATGATGACATTCATATTGAACATGAACCATGAGAACTATGATAAGGCACTTGAATGATATTTCCCTATCAGCCCCATCGGTACAACGAGAGGGTTTGTTTGGTCATCCATGTCTACATCCAATTAACGAAAACTGGATTGTTTTCACTTCATAAAGGGTTCAGTATAGTTTTTTTTTGTTGTTGTTTTTTTTCTCTTCACAATATTCGACAGTATAAAACATTGAGTTGTAAAAATATACGTTCTCTGGAGGATAATAAAAGTGTCGTTTCTGTACATGTTTTCTTTTGTCACTCTTTGAACATTTATCTACAAATTTCATACATTTGTACAGCAGATAGGCAAGCATGGCTTATACATCCTCAGAGAGGCTTGTTCACTGAAAGTGTCGGATTGTTCCGGAAAGGAAATGGTCTTCTTCTTCCATGATTTCAGCTGTCTCACTGAAATCGCTCCTCAGACGTGGTTCACCGGGTTGTGGTGATGCGATACAGAGGTGCACGCATCATCCACACCGTCATGCGTTACATTCAGACTCATTACTGTAACTGCAGGATCACTTGAGCGACGGGGTTGGGGTGTCGGTGGAGGGCAGTCCGTTTCCTCCCCAGTGCGAACTGGGAGTCGCTGAAGGTCTGGCTTTGATTTAGAGGGTGCGGGGCAAATCATTATTGCTTATTGCTTACAAAGAGTGCAGATCTACTGCGGCAGGAGCGTCCGCCCGCATCCGTGTCCAACGAGTGGAATCTGTACATCCACTGCCTGTGACAGCTCTTACATACATTTTTTTTTTTTTTTTTTTTTTTAGTCTTTCATTCATTCAATTTAGGGCAGAGATGTGATCTGCAGGCAGGTAATGGGCAGGTCATCATTGGGTGAAGAGGTCAGAAGGTCAGGGGTTAGTTGCCAGTGGTGGCTGAGTGGGTTAGAGAGACAAACAAACAGAAAAGGGGGAGGGAAACAAGGAAAGGAGGAAGGAAACAAAAGATAGAGGAGATTAGTTTCAGCTAGTGAAAGCAGGATGACAATATGAAAAGCATTTATAAACCAATCACACGTAGGCTCTTGATTCAGTCGCCCCACAGCACAGCTTTTATATCTCGGTGCTAGACATGAAACGGTTAAATGTGTGTGGAAGCTTGTTTCCACCATGAAATAAAAAATAAAATAAAGGTAATTGTGACTTTTTATCTCACAATTGTGTGATATAAAGTCAGAATTGCGAGTTATAAGGTCAGAATTGTGAGATATAAACTTGCAATTGCATGTTATAAAGTCAAACTTGCAAGATATAAACTTGCAATTCTGAGAAAAAAAAATTACTTTATAACTCGCAATTTGGACTTTATATCTCGCAATTCAGACTTTATATCTCGCAATTCGGACTTTATCACGCAATTCGGACAATCTCGCAATTCGGACTTTACATCATGCAATTCTGACTTTACATCATGCAATTCTGACTTTATATCTCACAATTCGGACTTTATAACTCGCAATTCGGACTTTACATCATGTAATTCGGACTTTATATCACGCAATTCTGACTTTATAACTCGCAATTCGGACTTTATATCACCCAATTCTGACTTTATAACTTGCTATTCTGACTTTATATCTCGCAATTCGGACTTTATTGTGCAATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU42316 True 2422 lncRNA 0.40 2 3477220 3479704

Neighbor

gene id symbol gene type direction distance location
CI01000005_03447497_03448897 NA coding upstream 27237 3447187 ~ 3449983 (+)
CI01000005_03423676_03430312 NCOA4 coding upstream 46739 3423676 ~ 3430481 (+)
CI01000005_03317813_03368502 TJAP1 coding upstream 107836 3316294 ~ 3369384 (+)
CI01000005_03167707_03171889 DNPH1 coding upstream 305200 3167707 ~ 3172020 (+)
CI01000005_03097346_03117235 ZNF318 coding upstream 359843 3096946 ~ 3117377 (+)
CI01000005_03521422_03522147 NA coding downstream 39520 3519224 ~ 3522376 (+)
CI01000005_03600059_03605667 NA coding downstream 119870 3599574 ~ 3605975 (+)
CI01000005_03782413_03784445 NA coding downstream 302709 3782413 ~ 3784819 (+)
CI01000005_03804929_03868048 NA coding downstream 325181 3804885 ~ 3868281 (+)
CI01000005_03886705_03918267 NA coding downstream 404661 3884365 ~ 3918454 (+)
G37276 NA non-coding upstream 23608 3453220 ~ 3453612 (+)
G37235 NA non-coding upstream 236587 3240140 ~ 3240633 (+)
G37233 NA non-coding upstream 240937 3235972 ~ 3236283 (+)
G37222 NA non-coding upstream 260956 3216064 ~ 3216264 (+)
G37214 NA non-coding upstream 269490 3207495 ~ 3207730 (+)
G37010 NA non-coding downstream 2360 3482064 ~ 3542978 (+)
G37013 NA non-coding downstream 5925 3485629 ~ 3490301 (+)
G37284 NA non-coding downstream 15977 3495681 ~ 3498125 (+)
G37297 NA non-coding downstream 36738 3516442 ~ 3518449 (+)
G37325 NA non-coding downstream 90473 3570177 ~ 3571272 (+)
G36291 NA other upstream 1816188 1659733 ~ 1661032 (+)
G36223 NA other upstream 1939416 1503143 ~ 1537804 (+)
G35533 NA other upstream 2953439 491908 ~ 523781 (+)
G37392 NA other downstream 243040 3722744 ~ 3723503 (+)
CI01000005_04735429_04736817 COX20 other downstream 1255642 4735346 ~ 4737082 (+)
G39930 NA other downstream 3517840 6997544 ~ 6998340 (+)
CI01000005_07600541_07600974 NA other downstream 4118285 7600541 ~ 7602964 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005727 qkib coding NC_007124.7 CM002897.2 3667230 ~ 3843692 (+)