RNA id: TU133839


Basic Information

Item Value
RNA id TU133839
length 1656
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G90373
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 3401964 ~ 3403754 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATTTATTCAGGCATCAGGCCATCACATCAACCCTATACAGCTCATCTAACAGAGTATGCTGTTATTggttaaatacagtatattcatAAATAGACTGtacatctgtaaaataaataattcactatTGCGTATTATAAGTCACTTGGTGTTTAAGGTTTCTGTTCCAGCTTTGAACTGTCTTGCTCTAAGCGCTACAGGTCATGCGGCGTGAGAGGTTGCACACTAACTGGTGGTCTCGCGGTAGTCGTGCGAGCACAAAACATGGGCAGCTCCAGTATCACATCTCTGTCTCTGCCAAAAAGCTCTCACCCAGTCCTGATGTCATCAGGACCATCTGGGAGCTGGAAGAGTCTGGAAGGGTCAGAGACAATCTGGTAAATGTTTGAACCGTGCGAAGAAGAGGACAGGAATTTGGTTCTGAACGACTACAGAGTCTCCTTTCTAGGGACAGTTCACATTCTCTCTCATCTGTATTCACCCTCAAACCTGCATCGACTTTCTTTGACCCCGTGTGTTTTTGGAGGATATCCTGGCTGCTCTTCTTCGTGTACTGCTCGcataaggctgcatttactcgATCAAAAATATAGACAGTGAAATACtattataacttaaaataacagtttgctattgcaatatattttaagatataacTAATTCCTGTGATCAAAACCGACTTTTAAGCATCTTTACTGCAGTCTACAGTGTCACgtgagaaaaagctttcaaCATTAAGAACAGTTCcttgattaataaatgttatatatataatgtcctTTTGAATAAATGTCTTAATGCCTCTTTATAAAAAGTACAGTAATGGAAATGAGAGGGGACTGGGTCTTTCTGTAAAAATGGGTCATCGGCACCATTGACGTCATTGGTTTTAATGAAATGGACTACTTCTTTGATACTTTTATttcgatttttgttttgttacctCCAAGTCCCCGTTCACTTTCACTATATGAAAAGGAGCGGCCAGGATTTGCTTCCAAAAACTCCtcttttgtacaaaaaaagacaGTCAAGTAGGTTCGGGGCGATGTGAGGATGAGTGATGACAGAATGGTATTCCTTTAAAACGTAACCTCGCTACTAACGACCTCTAAGTCTAATGACTTTAGGATATACAGGACAGAGCACTCACAACTTGGCCATTATAAGAAATTCGTATTTCTATTTCGTGAGTAGAAATGATCTCTCCTAAACAATGCATGAGTAATGTCGATTTCTGTACTTCCCTTTTGGCCCAGCCTCTTAGAGCCGGTTACTCCGGGAAAGTCATCCACACACaaagagggaaagagaaagtGGAAGAGAAATCTAAACGAAACGGTCTTGAAGCAAAGAGAACAGGCTGAGAGAGTGAGGCTGGTCAGCCCTTACTGCTGTGGGGAACCCAGGCGGGTTTCTCCTTGGGGGTCACCGAGCGTCCGCGCGCCTCTCCGTCTttatcctcctcctcctctccttcgGAGAGCAGGTCTGAGATCTGCTGCTGCAGCTCGGGGCTGATGTCGTTCTCGGCCAGGACCAGCACGCGCAGGCTGGTGGGGTAGTTCTCCACCATGTCCAGGAAGACCTGACCACAGACAATCGAGGGAAGGCGTCCGTTTAAAAGACGGCTATTCGGCGTGGCGGAATACGTCGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133829 lncRNA upstream 86056 3315663 ~ 3315908 (+) True G90365
TU133809 lncRNA upstream 123704 3051982 ~ 3278260 (+) False LOC122356070
XR_006252296.1 lncRNA upstream 154832 3246263 ~ 3247132 (+) True LOC122356226
TU133743 lncRNA upstream 200477 3199847 ~ 3201487 (+) True G90326
XR_006252271.1 lncRNA upstream 381073 3020068 ~ 3020891 (+) True LOC122356074
TU133844 lncRNA downstream 46419 3450173 ~ 3450485 (+) True G90378
TU133848 lncRNA downstream 65693 3469447 ~ 3489791 (+) True G90381
TU133855 lncRNA downstream 98314 3502068 ~ 3543652 (+) True G90388
TU134029 lncRNA downstream 165314 3569068 ~ 3569492 (+) True G90514
TU134092 lncRNA downstream 448456 3852210 ~ 3855543 (+) True G90564
XM_043255234.1 mRNA upstream 3606 3320429 ~ 3398358 (+) False tjap1
XM_043255237.1 mRNA upstream 3606 3320430 ~ 3398358 (+) False tjap1
XM_043255236.1 mRNA upstream 3606 3320431 ~ 3398358 (+) False tjap1
XM_043255235.1 mRNA upstream 3606 3321419 ~ 3398358 (+) False tjap1
XM_043255232.1 mRNA upstream 3606 3361587 ~ 3398358 (+) True tjap1
XM_043255502.1 mRNA downstream 13780 3417534 ~ 3426736 (+) False ncoa4
XM_043255501.1 mRNA downstream 14820 3418574 ~ 3426736 (+) True ncoa4
XM_043255503.1 mRNA downstream 30769 3434523 ~ 3440314 (+) False LOC122356604
XM_043255505.1 mRNA downstream 30943 3434697 ~ 3440314 (+) True LOC122356604
XM_043255504.1 mRNA downstream 31710 3435464 ~ 3440314 (+) False LOC122356604
TU133814 other upstream 116558 3174735 ~ 3285406 (+) True G90350
TU133812 other upstream 120967 3277837 ~ 3280997 (+) False G90348
TU133811 other upstream 120967 3279202 ~ 3280997 (+) True G90348
TU133796 other upstream 127592 3271325 ~ 3274372 (+) True G90343
TU133820 other upstream 192232 3207776 ~ 3209732 (+) False LOC122356782
TU133843 other downstream 45647 3449401 ~ 3450017 (+) True G90377
XR_006252394.1 other downstream 216652 3620406 ~ 3713763 (+) False prkn
XR_006252399.1 other downstream 405299 3809053 ~ 3829741 (+) False pkdcca
unassigned_transcript_1924 other downstream 668052 4071806 ~ 4071899 (+) True trnai-uau_4
TU134239 other downstream 778745 4182499 ~ 4244041 (+) False G90660

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011360 True 423 processed_transcript 0.44 2 NC_007124.7 3962767 ~ 3966255 (+)