RNA id: XR_006252394.1


Basic Information

Item Value
RNA id XR_006252394.1
length 1677
RNA type transcript
GC content 0.55
exon number 13
gene id prkn
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 3620406 ~ 3713763 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTTCTTTCTACGCCGATGAAGAGTATGTGCTGCTGAACTCGATTTCCCAAGATCCCGTGCGGTTTTGGCTCCGTTCGCCCACGCGACATGTCAACAAACACCAAAGTCACAGTGGAGTGAATTCGGGCCGCAGCTAATACAGTATGATCGTATATGTGCGGTTTAACTCCAGCCATGGTTTCCCGGTGGAGCTGGAGCAGGGCGCGAGTGTATCAGACCTGAAGGAAACAGTGGGACTTTTACAGGGAGTACAGCCTGATCGACTGCGGGTCATCTTCGCTGGACGAGAGCTCTGCAATGAATCCACACTTCAGGGCTGCGATCTCCCCGAGCAGAGCACGGTTCATGTGGTTCTGCCCCCGTCTACCTCGAGTCAGCTCTCTGAGCTGGTCCAGCAGCACAGGCCGGGCGGCGGGATGGAGAGCTTGACCCGACTCGACCTCAGTGGCTCCCGTCTGGCCAGCGTGTCTGAAGGCCTGGCTGTCATTCTGGAGACAGATTCGTCCAGACAGGGGAACTCTGTTGGACACACAGAAGCTAAAGCCCACAGCAGTTTCTACGTGTTCTGTAAGACGGTCTGCAAGGCCGTTCAGCCTGGAAAACTACGTGTTCGCTGCAGAGACTGCAAACAAGGCACTCTTACTCTCAACAGGGGGCCGTGCGGCTGGGATGATGTCCTTCTCCCTAACAGGATTCATGGAGTATGTCAGTCACAAGACTGTGATGGCACAGTGGCGGAGTTCTACCTCAAATGCGCTGCCCACCCCACCTGTGATAATGACACTTCAGCAGCACTGGACTTGATAATGCCCAACACACGCAGAGTGCCCTGCATAGCCTGCACCGACATTGTTACTCCAGTGCTGGTGTTTCAGTGTGCCGAGCGTCATGTGATCTGCCTGGAGTGCTTCCACCTGTACTGTGTGACCAGACTCAATGAGCGACAGTTTATCCAGGAACCGCTGGTGGGCTATTCTTTGCCCTGCGCAGCCGGCTGTCCTGATTCGCTCATTAAAGAGGTTCATCATTTCCGAGTCCTGGGAAATGAGCAGTACGAGCGCTACCAGCGATACGCAGCGGAGGAGTGTGTTCTTCAGATGGGAGGAGTTCTGTGTCCCGCTCCAGGATGTGGCGCCGGGCTACTTCCTGCGGATGACGTCAGAAGAGTCTGCTGCGAGATGGGCTGTGGGTTTGTGTTTTGCAGGGACTGTAAGGCAGAGCATCACGAGGGCCCCTGCAGACAGAGGACAGGCACCGCGACAGGAAGCGCCCCGCAGGGTTATATTGTAGATGAAGAGGCAGCTCTCCGTGCTCGCTGGGAACAGGCCTCACAGGAGACTATAGCCGAAACCACTCACCCCTGCCCCAAATGCCAAGTTCCTGTGGAAAAAAATGTTCACTCTTCTAGCATCTTAAGAAGGAAAAGGAGATCTTCGGGTGCTCTCGGCTGAATACAGCAGGAGAATGAAGAGATTCAGTGGAGTTGGACCTGACAGGCCCGAAAACCTTGAGCTTGAACTGACCGATGGAGTCTCTTGTCAGTCGGTGAAGCCATCCATTGCTTCTCCAGTGTCTGTGGCATCGGTTAAAGATGTGGGGCGGTCAGTCGCTCACCTGGCATCCTATGCCCGAGGACGCTGGAAACATGCTGCCCGCAAGTCCGTCAGGAAGAAACC

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0009266 response to temperature stimulus biological_process
GO:0006979 response to oxidative stress biological_process
GO:0006120 mitochondrial electron transport, NADH to ubiquinone biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0005829 cytosol cellular_component
GO:0005739 mitochondrion cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134029 lncRNA upstream 50914 3569068 ~ 3569492 (+) True G90514
TU133855 lncRNA upstream 76754 3502068 ~ 3543652 (+) True G90388
TU133848 lncRNA upstream 130615 3469447 ~ 3489791 (+) True G90381
TU133844 lncRNA upstream 169921 3450173 ~ 3450485 (+) True G90378
TU133839 lncRNA upstream 216652 3401964 ~ 3403754 (+) True G90373
TU134092 lncRNA downstream 138447 3852210 ~ 3855543 (+) True G90564
TU134099 lncRNA downstream 158996 3872759 ~ 3877501 (+) True G90571
TU134100 lncRNA downstream 158996 3872759 ~ 3894955 (+) False G90571
TU134102 lncRNA downstream 238837 3952600 ~ 3955913 (+) False G90573
TU134103 lncRNA downstream 238837 3952600 ~ 3953707 (+) True G90573
XM_043255503.1 mRNA upstream 180092 3434523 ~ 3440314 (+) False LOC122356604
XM_043255505.1 mRNA upstream 180092 3434697 ~ 3440314 (+) True LOC122356604
XM_043255504.1 mRNA upstream 180092 3435464 ~ 3440314 (+) False LOC122356604
XM_043255502.1 mRNA upstream 193670 3417534 ~ 3426736 (+) False ncoa4
XM_043255861.1 mRNA downstream 70 3713833 ~ 3717294 (+) True LOC122356793
XM_043255862.1 mRNA downstream 3533 3717296 ~ 3729468 (+) True si:ch73-193i2.2
XM_043255416.1 mRNA downstream 16150 3729913 ~ 3759135 (+) True ubr2
XM_043256022.1 mRNA downstream 95295 3809058 ~ 3832550 (+) True pkdcca
XM_043254839.1 mRNA downstream 167823 3881586 ~ 3948955 (+) True LOC122356299
TU133843 other upstream 170389 3449401 ~ 3450017 (+) True G90377
TU133814 other upstream 335000 3174735 ~ 3285406 (+) True G90350
TU133812 other upstream 339409 3277837 ~ 3280997 (+) False G90348
TU133811 other upstream 339409 3279202 ~ 3280997 (+) True G90348
TU133796 other upstream 346034 3271325 ~ 3274372 (+) True G90343
XR_006252399.1 other downstream 95290 3809053 ~ 3829741 (+) False pkdcca
unassigned_transcript_1924 other downstream 358043 4071806 ~ 4071899 (+) True trnai-uau_4
TU134239 other downstream 468736 4182499 ~ 4244041 (+) False G90660
TU134245 other downstream 468736 4182499 ~ 4244041 (+) False G90660
TU134242 other downstream 527369 4241132 ~ 4244041 (+) True G90660

Expression Profile