RNA id: TU134099


Basic Information

Item Value
RNA id TU134099
length 395
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G90571
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 3872759 ~ 3894955 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ccgaatgtgtaacttgcaagtgacgtcgcttcagttgcaagggaagcaaactgtttccagctctcttcagtttgcttctgaaacgcagcccctcacacatctttatttatacataaagaaaaagccacccccataaaaaggttacaatagggcacattcctttcttgtggGTGCTTGATCCTGATTAGATATCATTTAGGCGGAATCTGCTTGGGGGTGAGTTCAGCAAGAGTTCATCAAGGTGTCGGCTCTGGACAGTGTCCTGTCCTTTGTGAGCGTGTtgctctttacacacacacacacacacacacacacacagaagttcttcaaaaccatattgatatatgagacaataatgtcaataaaagtacgaaacaagaatagtagttccaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134092 lncRNA upstream 17216 3852210 ~ 3855543 (+) True G90564
TU134029 lncRNA upstream 303267 3569068 ~ 3569492 (+) True G90514
TU133855 lncRNA upstream 329107 3502068 ~ 3543652 (+) True G90388
TU133848 lncRNA upstream 382968 3469447 ~ 3489791 (+) True G90381
TU133844 lncRNA upstream 422274 3450173 ~ 3450485 (+) True G90378
TU134102 lncRNA downstream 75099 3952600 ~ 3955913 (+) False G90573
TU134103 lncRNA downstream 75099 3952600 ~ 3953707 (+) True G90573
TU134104 lncRNA downstream 75099 3952600 ~ 4049612 (+) False G90573
TU134114 lncRNA downstream 115007 3992508 ~ 4013116 (+) True G90579
TU134192 lncRNA downstream 179759 4057260 ~ 4062779 (+) True G90646
XM_043256022.1 mRNA upstream 40209 3809058 ~ 3832550 (+) True pkdcca
XM_043255416.1 mRNA upstream 113624 3729913 ~ 3759135 (+) True ubr2
XM_043255862.1 mRNA upstream 143291 3717296 ~ 3729468 (+) True si:ch73-193i2.2
XM_043255861.1 mRNA upstream 155465 3713833 ~ 3717294 (+) True LOC122356793
XM_043255958.1 mRNA upstream 161761 3643335 ~ 3710998 (+) False prkn
XM_043254839.1 mRNA downstream 4085 3881586 ~ 3948955 (+) True LOC122356299
XM_043255728.1 mRNA downstream 448137 4325638 ~ 4348853 (+) True plekhh2
XM_043255864.1 mRNA downstream 483034 4360535 ~ 4362542 (+) True LOC122356796
XM_043255865.1 mRNA downstream 486522 4364023 ~ 4373553 (+) True si:ch73-105b23.6
XM_043256129.1 mRNA downstream 495713 4373214 ~ 4377830 (+) True LOC122356983
XR_006252399.1 other upstream 43018 3809053 ~ 3829741 (+) False pkdcca
XR_006252394.1 other upstream 158996 3620406 ~ 3713763 (+) False prkn
TU133843 other upstream 422742 3449401 ~ 3450017 (+) True G90377
TU133812 other upstream 591762 3277837 ~ 3280997 (+) False G90348
unassigned_transcript_1924 other downstream 194305 4071806 ~ 4071899 (+) True trnai-uau_4
TU134239 other downstream 304998 4182499 ~ 4244041 (+) False G90660
TU134245 other downstream 304998 4182499 ~ 4244041 (+) False G90660
TU134242 other downstream 363631 4241132 ~ 4244041 (+) True G90660
TU134595 other downstream 1114826 4992327 ~ 4997896 (+) False si:ch73-49p17.1

Expression Profile