RNA id: XM_043256129.1


Basic Information

Item Value
RNA id XM_043256129.1
length 1754
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC122356983
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4373214 ~ 4377830 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTTCTGCCTCCCTCCGTTCCCCTTCCCATGTCATCAGATGGCAGACTGCACCAGCACTGGCTACAATTACACATGTAAATGTAAGCGTGGCTACAAAGGCAACGGAATACAGTGCGAAGATATTAATGAGTGTCTGGACCCCTCGGCCTGTCCCAGCGCCAAGTTTGAGTGTGTGAACATGCCTGGATCAGTGCGCTGCTCATGCCGTTATCAGAAGACCAGAGACTCTGACAGCTGTGGCAAGTGGCTTTAAGTTCAAAACTACTGTACACAGATAACGGATTGAAGAAAACAAGATTTTGAATCCTTCAATCAGTTAAACCAATTTCTACGTTACataaatgactgattttgttgattttttctctcttttctttttaggtGACTCTGCTAATCCTACAGgatGGAATGTTTTTAACGTATCCGTGAGCTGGGGAAATCAGGCATCTTCCTCGGGACTGAGTAAGCTGGAGGAGATCCTGTCGATGGGTTTCCAGAACAAGTTCTACAACGCCAGTGCTATAGCTCCTGATTCATCCTCAGTGGGTGGGCAGAATGAGTACAGGATAAATGTGTCCAGTGATACGCCGCACTGGTATGTCATGGACTACCTGACCCGAGTCAGTCAGTACTACGGCATCCGTTCAGCCTCTGTGGAAgACCTCAATGAATGCACAGCAAAAGAGGATCCGTGTTCAAAAACAGCCCAATGCGTCAACACCTACGGGGGATACAGGTGTGTGTGCAACGGCACGGATCTAAAGGAGGATTCACAGCTGTGCAGTTTTGACTGGAACAACATTAACCGGACAAACCTGATGGGCGCTCAGACTGCGGAGGATAAGAAGTCTTTAATTTTGGGGCTGGTCCTGGGCATTGGTATCCctctcctgctgctgctgttgctggcGGCGCTTGcctgcttctgctgctgctcACGAAAGAAAACCATGTCTGGGGATATTCCTCATCTGCTGCCCGAGTACATTCAGGAGCAGTTCAACCCTCCGTTCAACTTTGACGACCCCTCTCTGCACTACATCACCCACGTCAGCCCGCGTATCCTTGATAACCTCACTCCTCAACAGAAGCGTCGTGTACTGTATCGATAACGCAGGCCCTGTGTGGTTCGTGCAGCATCAGTGCAGATgtacatttgtgtttaaaaagaaatcccagtatgatattatttatattaaacagaGACTGCTGACTTATTCGCCATGTGTGAATATGAAAAAACATACAAGCAATACAAGCATGGAGCAATCTGTGAGTAACAAGCTCTGTTGAATTATTAACTCTTGTGAagataatattgtatatatacacagtgtTCTCATCAAATTAACACAGTTATCAGCTGACATGCATTAGTTGCATTTCTGTAGCACTGGCCTTGAAAAACAAATCTActgtttgcagatgtttatGTAAGAGGAGAAAAATCTGAACATCAGTCGCAGGCATTGCTGGAAATATGGTTAAATTTAGGGAAATTAGGCACATTTTAGGACTACTCAATAATATAAAAGGTCTGAATGCATTTTACTAACCCAAATCGtggtaaaaatgtgtattaatgttataaaataatgtgaaataccACAGAAATGGTTCTGTAGTACATTTTGCTCTTATTTTGGAGGTGAAATGTGGCATTCTGCATGGAGTGTTTAATTCTGCTCAGAATTTTCTAAACAAGTCACTATTAAACACTTTGTCCTAAAATACTTAGCAAGGATTATGATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134238 lncRNA upstream 19283 4352619 ~ 4353931 (+) False G90660
TU134244 lncRNA upstream 19457 4352619 ~ 4353757 (+) False G90660
XR_006252408.1 lncRNA upstream 127424 4244608 ~ 4245790 (+) True LOC122357002
TU134199 lncRNA upstream 230712 4137323 ~ 4142502 (+) True LOC122356176
XR_006252290.1 lncRNA upstream 231126 4137317 ~ 4142088 (+) False LOC122356176
TU134231 lncRNA downstream 81809 4459639 ~ 4465868 (+) True G90659
TU134306 lncRNA downstream 93235 4471065 ~ 4471744 (+) True G90700
TU134305 lncRNA downstream 93586 4471416 ~ 4471744 (+) False G90700
TU134315 lncRNA downstream 183818 4561648 ~ 4584966 (+) False si:ch211-250c4.5
TU134314 lncRNA downstream 205978 4583808 ~ 4625544 (+) False si:ch211-250c4.5
XM_043255864.1 mRNA upstream 10672 4360535 ~ 4362542 (+) True LOC122356796
XM_043255728.1 mRNA upstream 24361 4325638 ~ 4348853 (+) True plekhh2
XM_043254839.1 mRNA upstream 424259 3881586 ~ 3948955 (+) True LOC122356299
XM_043256022.1 mRNA upstream 540664 3809058 ~ 3832550 (+) True pkdcca
XM_043255416.1 mRNA upstream 614079 3729913 ~ 3759135 (+) True ubr2
XM_043255643.1 mRNA downstream 9351 4387181 ~ 4391197 (+) True calm2a
XM_043255954.1 mRNA downstream 15063 4392893 ~ 4400833 (+) False stpg4
XM_043255952.1 mRNA downstream 15063 4392893 ~ 4400309 (+) True stpg4
XM_043255260.1 mRNA downstream 60621 4438451 ~ 4441070 (+) True mcfd2
XM_043255259.1 mRNA downstream 60627 4438457 ~ 4441070 (+) False mcfd2
TU134239 other upstream 129173 4182499 ~ 4244041 (+) False G90660
TU134245 other upstream 129173 4182499 ~ 4244041 (+) False G90660
TU134242 other upstream 129173 4241132 ~ 4244041 (+) True G90660
unassigned_transcript_1924 other upstream 301315 4071806 ~ 4071899 (+) True trnai-uau_4
XR_006252399.1 other upstream 543473 3809053 ~ 3829741 (+) False pkdcca
TU134595 other downstream 614497 4992327 ~ 4997896 (+) False si:ch73-49p17.1
unassigned_transcript_1926 other downstream 2753596 7131426 ~ 7131496 (+) True trnag-gcc_68
TU135767 other downstream 3458360 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 3480868 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 3928656 8306486 ~ 8310824 (+) True G91833

Expression Profile