mcfd2 (mcfd2,LOC107727380,LOC107699287)


Basic Information

Item Value
gene id mcfd2
gene name mcfd2,LOC107727380,LOC107699287
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4438451 ~ 4441070 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255259.1
AGCACACACctttcacattaaataaaaaaacataaaatgcaatgaaattaaattaaaccgtTTTGAAAAAGCCTTTATTTATAGAGTTTGCACGTATTGTTACTGTTCACATTATTCTGTTATCGTccgaataaaataaaacatgatgaaACGTAAAAAAACAGCCATCGCGTCCAATCAAAGTTTAGCTGTCGTGTCCATGAGGTGAAAGGTAACTACGGCGAGCGAAGGCGCTCAGAAAGAGCGGCGCTGAGTAAACACCAGCAGGAGTTCACTGTTACTCCACTGTGCGTGAACAAATAGAGCGAATATTCACCCGCCGGCCGTGATTCATAGCAGTGTAATGAGATTGAAGGAAAGGTCTGGGCAGCTGAGACCCTGGAGCTGGTTCCTGCTCTGCTCCAGCTGTGTGCTGACCGTGTGGGCCCACGGGGGACCGCATGGAGAACCGGCTGTGCCTCCACCCATCACCCGGCTGGACAGGAATATGGTTCAGGATAAAGACCATATCATGGAGCATTTAGAAGGGGTGGTTGAGAAGCCCGAGTCGGACATGACGCCGCAGGAGCTGCAGCTTCACTACTTCAAGATGCACGACTACGATGGCAACAATCTCCTGGATGGCCTCGAGCTCGCCACTGCCATCACTCACGTCCACCGAGAGGAAAGAGGAGAAGACAGCCAGCCAATGAGGGAAGAGGATCTCATCAACCTCATCGACGACGTTCTCCGAGACGATGACAAGAACAACGACGGCTACATTGACTACGCGGAGTTCGCCAGGTCTCTGGAGTGACGGACGTCGGGGAGAGCCGCCGCCTTACTGTGAACGCAGATTACCTCTGACGGACAGATCTCCGGCACATTCCTTCACGCGCGTGAGATTTCACGGGCACAGTATATTCGTGCTCCGGTGTAACCTGTATAAAAAAACGTCATGCATTGAAGCGGTGAGGGTCTCGACGAAGTGACATCAAGTGTTTGTCTCGTCAGAACGGACCATAATGTACAAACTGCCAACTTTATCCACTGTAAATGAGCGTAAATTATGttatcatcaaataaatgcttagCGGTGACCCTTTCCTGCAAA
>XM_043255260.1
ATATGTAGCACACACctttcacattaaataaaaaaacataaaatgcaatgaaattaaattaaaccgtTTTGAAAAAGCCTTTATTTATAGAGTTTGCACGTATTGTTACTGTTCACATTATTCTGTTATCGTccgaataaaataaaacatgatgaaACGTAAAAAAACAGCCATCGCGTCCAATCAAAGTTTAGCTGTCGTGTCCATGAGGTGAAAGGTAACTACGGCGAGCGAAGGCGCTCAGAAAGAGCGGCGCTGAGTAAACACCAGCAGGAGTTCACTGTTACTCCACTGTGCGTGAACAAATAGAGCGAATATTCACCCGCCGGCCGTGATTCATAGCAGgtAATTTGTATAACTCAATCAATGTGATTTTTGAGCTGTGCCTGCTGTCATTGGTCAGCTGTTTATCAGAAGTAACGAACGGAGCCGTGTCTTGTTCTCGCGATAACTCCCCGCACCTCGTGATTTCAGTGTAATGAGATTGAAGGAAAGGTCTGGGCAGCTGAGACCCTGGAGCTGGTTCCTGCTCTGCTCCAGCTGTGTGCTGACCGTGTGGGCCCACGGGGGACCGCATGGAGAACCGGCTGTGCCTCCACCCATCACCCGGCTGGACAGGAATATGGTTCAGGATAAAGACCATATCATGGAGCATTTAGAAGGGGTGGTTGAGAAGCCCGAGTCGGACATGACGCCGCAGGAGCTGCAGCTTCACTACTTCAAGATGCACGACTACGATGGCAACAATCTCCTGGATGGCCTCGAGCTCGCCACTGCCATCACTCACGTCCACCGAGAGGAAAGAGGAGAAGACAGCCAGCCAATGAGGGAAGAGGATCTCATCAACCTCATCGACGACGTTCTCCGAGACGATGACAAGAACAACGACGGCTACATTGACTACGCGGAGTTCGCCAGGTCTCTGGAGTGACGGACGTCGGGGAGAGCCGCCGCCTTACTGTGAACGCAGATTACCTCTGACGGACAGATCTCCGGCACATTCCTTCACGCGCGTGAGATTTCACGGGCACAGTATATTCGTGCTCCGGTGTAACCTGTATAAAAAAACGTCATGCATTGAAGCGGTGAGGGTCTCGACGAAGTGACATCAAGTGTTTGTCTCGTCAGAACGGACCATAATGTACAAACTGCCAACTTTATCCACTGTAAATGAGCGTAAATTATGttatcatcaaataaatgcttagCGGTGACCCTTTCCTGCAAA
>XM_043255261.1
TTCAAGTCCTCCATATGTCAAGAACACGCGCCCGATTCTCACTGCCATCatttaatgagaaaatatataacgTGTAATGAGATTGAAGGAAAGGTCTGGGCAGCTGAGACCCTGGAGCTGGTTCCTGCTCTGCTCCAGCTGTGTGCTGACCGTGTGGGCCCACGGGGGACCGCATGGAGAACCGGCTGTGCCTCCACCCATCACCCGGCTGGACAGGAATATGGTTCAGGATAAAGACCATATCATGGAGCATTTAGAAGGGGTGGTTGAGAAGCCCGAGTCGGACATGACGCCGCAGGAGCTGCAGCTTCACTACTTCAAGATGCACGACTACGATGGCAACAATCTCCTGGATGGCCTCGAGCTCGCCACTGCCATCACTCACGTCCACCGAGAGGAAAGAGGAGAAGACAGCCAGCCAATGAGGGAAGAGGATCTCATCAACCTCATCGACGACGTTCTCCGAGACGATGACAAGAACAACGACGGCTACATTGACTACGCGGAGTTCGCCAGGTCTCTGGAGTGACGGACGTCGGGGAGAGCCGCCGCCTTACTGTGAACGCAGATTACCTCTGACGGACAGATCTCCGGCACATTCCTTCACGCGCGTGAGATTTCACGGGCACAGTATATTCGTGCTCCGGTGTAACCTGTATAAAAAAACGTCATGCATTGAAGCGGTGAGGGTCTCGACGAAGTGACATCAAGTGTTTGTCTCGTCAGAACGGACCATAATGTACAAACTGCCAACTTTATCCACTGTAAATGAGCGTAAATTATGttatcatcaaataaatgcttagCGGTGACCCTTTCCTGCAAA

Function

symbol description
mcfd2 Predicted to enable calcium ion binding activity. Orthologous to human MCFD2 (multiple coagulation factor deficiency 2, ER cargo receptor complex subunit).

NR:

description
PREDICTED: multiple coagulation factor deficiency protein 2 isoform X1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K20364 MCFD2; multiple coagulation factor deficiency protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255259.1 False 1093 mRNA 0.49 4 4438457 4441070
XM_043255260.1 True 1228 mRNA 0.48 4 4438451 4441070
XM_043255261.1 False 826 mRNA 0.52 4 4439046 4441070

Neighbor

gene id symbol gene type direction distance location
stpg4 LOC107590019,LOC107678571,LOC107708399 coding upstream 37618 4392893 ~ 4400833 (+)
calm2a calm1,LOC107396020,LOC102778633,LOC102293206 coding upstream 47254 4387181 ~ 4391197 (+)
LOC122356983 LOC107727362,LOC107586506,LOC107699285,LOC107678514,LOC107590018,LOC107756817 coding upstream 60621 4373214 ~ 4377830 (+)
si:ch73-105b23.6 LOC107586506,LOC107727362,LOC107699285,LOC107756817,LOC107678514 coding upstream 64898 4364023 ~ 4373553 (+)
LOC122356796 NA coding upstream 75909 4360535 ~ 4362542 (+)
prkceb prkceb,LOC107727364,LOC107699301,LOC107708403,LOC108422423,LOC108263296 coding downstream 33350 4474420 ~ 4547509 (+)
epas1b LOC107727363,LOC107586486,LOC107699276,LOC107708405 coding downstream 108030 4549100 ~ 4583499 (+)
dhx57 dhx57,LOC107727356,LOC107708406,LOC107678533,LOC107699277 coding downstream 154578 4595648 ~ 4607089 (+)
atl2 atl2,LOC107586488,LOC107699303,LOC107589558,LOC107708410,LOC107727384,LOC107678587 coding downstream 171572 4612642 ~ 4622799 (+)
si:ch211-250c4.3 LOC107699306,LOC107589555,LOC107727387,LOC107708411,LOC107678604,LOC100535981 coding downstream 202042 4643112 ~ 4669016 (+)
LOC122357002 NA non-coding upstream 192661 4244608 ~ 4245790 (+)
LOC122356176 NA non-coding upstream 295949 4137317 ~ 4142502 (+)
G90650 NA non-coding upstream 332980 4105247 ~ 4105471 (+)
G90646 LOC107707147,LOC108422651 non-coding upstream 375672 4057260 ~ 4062779 (+)
G90579 LOC107586473,LOC107758132,LOC107666233 non-coding upstream 425335 3992508 ~ 4013116 (+)
G90659 socs5b,socs5,LOC107727375,LOC107586485,LOC107699300,LOC107708402 non-coding downstream 18569 4459639 ~ 4465868 (+)
G90700 NA non-coding downstream 29995 4471065 ~ 4471744 (+)
G90888 NA non-coding downstream 523632 4964702 ~ 4965015 (+)
G90879 LOC107733683,LOC107690158,LOC107582524,LOC107678493,LOC107708465 non-coding downstream 562340 5003410 ~ 5013662 (+)
G90905 NA non-coding downstream 594289 5035359 ~ 5036116 (+)
G90660 epcam,LOC107699293,LOC107727368,LOC107586477,LOC107707148,LOC107678540,LOC107707150,LOC108422531,LOC107723711 other upstream 84520 4182499 ~ 4353931 (+)
pkdcca pkdcca,LOC107669579,LOC107739483,LOC107718010,LOC107695038,LOC107590011,LOC107586469 other upstream 605901 3809053 ~ 3832550 (+)
prkn park2,LOC107739476,LOC107669573,LOC107696378 other upstream 724688 3620406 ~ 3713763 (+)
G90377 NA other upstream 988434 3449401 ~ 3450017 (+)
G90348 dnph1 other upstream 1157454 3277837 ~ 3280997 (+)
si:ch211-250c4.5 LOC107727386,LOC107699305,LOC107586489,LOC107708409,LOC107678597 other downstream 120578 4561648 ~ 4695842 (+)
si:ch73-49p17.1 LOC107678601,LOC107727381,LOC107589548,LOC107708422 other downstream 551083 4992153 ~ 4997991 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other downstream 736648 5177718 ~ 5198404 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other downstream 819966 5261036 ~ 5271247 (+)
lamtor3 lamtor3 other downstream 1510147 5951217 ~ 5952517 (+)

Expression


Co-expression Network