lamtor3 (lamtor3)


Basic Information

Item Value
gene id lamtor3
gene name lamtor3
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 5951217 ~ 5952517 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU135032
AAGAGCCTGCGTTTTCTGTCATGTGATGATCACACATAAACAAGCGAAGAACTTTTTATAAAACTGGGTCAAATTGAAGGCTGCAGCAGGCGAACTACACAGTCTATCTAATGAATATGGCAGATGTGAGTCTGTTTGTAATgcgttaaaatgttttttttttttttcttggaaatGTTATAATGCGTTTGATTTGATTGTTTCAGAATCTGAGGAGTTACTTGTATAAACAGCTGCCAAGTGTTGAAGGACTGCATGCGATAGTGGTGACAGACAGAGACGGAGTCCCTGTGATCAAAGTTGCCAATGACAATGCTCCTGAATACGCACTGCGGCCAGCCTTCCTGTCCACTTTTGCTTTGGCAACTGACCAGGGCAGCAAGCTGGGCTtgtccaaaaataaaagcatcattTGTTACTATAACACATACCAGATTGTACAATTTAATCGATTACCCTTAGTCATAAGTTTTATCGCAAGTAGTAATGCCAACACAGGTTTGATCTTCAGTCTTGAGAAGGAGCTAGTTCCTCTGATTGAAGAACTAAGGCAGGTGGTGGAAGTAGCTTAGCAGTTATTTGTCTCGGCACCTTCACACGTTTGGATGAGGATGATCTTgttcgtacacacacacacacacacacatgtacatacataaTGTTGGATGGTCTTGATGCTGTATGTCTTTTATGAATGTAACCCGCTCCTGTTTGTCTCCTGATTAATAAATTTGTCTAAAGCTT
>XM_043256152.1
ATTACGTACACGGAAGAGCCTGCGTTTTCTGTCATGTGATGATCACACATAAACAAGCGAAGAACTTTTTATAAAACTGGGTCAAATTGAAGGCTGCAGCAGGCGAACTACACAGTCTATCTAATGAATATGGCAGATAATCTGAGGAGTTACTTGTATAAACAGCTGCCAAGTGTTGAAGGACTGCATGCGATAGTGGTGACAGACAGAGACGGAGTCCCTGTGATCAAAGTTGCCAATGACAATGCTCCTGAATACGCACTGCGGCCAGCCTTCCTGTCCACTTTTGCTTTGGCAACTGACCAGGGCAGCAAGCTGGGCTtgtccaaaaataaaagcatcattTGTTACTATAACACATACCAGATTGTACAATTTAATCGATTACCCTTAGTCATAAGTTTTATCGCAAGTAGTAATGCCAACACAGGTTTGATCTTCAGTCTTGAGAAGGAGCTAGTTCCTCTGATTGAAGAACTAAGGCAGGTGGTGGAAGTAGCTTAGCAGTTATTTGTCTCGGCACCTTCACACGTTTGGATGAGGATGATCTTgttcgtacacacacacacacacacacacacatacacacacacacacacacacaca

Function

symbol description
lamtor3 Predicted to contribute to guanyl-nucleotide exchange factor activity and molecular adaptor activity. Predicted to be involved in cellular protein localization; cellular response to amino acid stimulus; and positive regulation of TOR signaling. Predicted to act upstream of or within regulation of TOR signaling. Predicted to be located in late endosome membrane. Predicted to be part of Ragulator complex. Orthologous to human LAMTOR3 (late endosomal/lysosomal adaptor, MAPK and MTOR activator 3).

NR:

description
ragulator complex protein LAMTOR3 precursor

GO:

id name namespace
GO:0043087 regulation of GTPase activity biological_process
GO:0034613 cellular protein localization biological_process
GO:0071230 cellular response to amino acid stimulus biological_process
GO:0016310 phosphorylation biological_process
GO:0032008 positive regulation of TOR signaling biological_process
GO:0071986 Ragulator complex cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135032 True 744 lncRNA 0.40 7 5951230 5952517
XM_043256152.1 False 606 mRNA 0.44 7 5951217 5952419

Neighbor

gene id symbol gene type direction distance location
LOC122357047 enpep,LOC107747565,LOC107666571,LOC107585235,LOC107667073,LOC107733706 coding upstream 4315 5936401 ~ 5946902 (+)
lrit3b lrit3b,LOC107556923,LOC107666384 coding upstream 15633 5930197 ~ 5935584 (+)
nsd2 LOC107747575,LOC107666517,LOC107556918,LOC107733764 coding upstream 143341 5795240 ~ 5807876 (+)
fgfr3 fgfr3,LOC107733743,LOC107666479,LOC107556915 coding upstream 210327 5708521 ~ 5740890 (+)
ky LOC107666377,LOC107747591,LOC107556906,LOC107733664,LOC107695013,LOC107568638 coding upstream 376784 5567502 ~ 5574433 (+)
pprc1 pprc1,LOC107666421,LOC107747555,LOC107569410,LOC107667059,LOC107733763,LOC107585240 coding downstream 125700 6078217 ~ 6087501 (+)
oga mgea5,LOC107666422,LOC107585241,LOC107667060 coding downstream 136435 6088952 ~ 6101193 (+)
npm3 npm3,LOC107666424,LOC107569414,LOC107747554,LOC107667062,LOC107585242,LOC107733732 coding downstream 149114 6101631 ~ 6103986 (+)
arl3a arl3,zgc:110197,LOC108263849,LOC103033567,LOC107733731,LOC107747553,LOC107667061,LOC103145158 coding downstream 151609 6104126 ~ 6107776 (+)
zmp:0000000662 zmp:0000000662,LOC107666523,LOC107747548,LOC107733769,LOC107667074,LOC107585245,LOC108421699,LOC108263473,LOC107569423 coding downstream 200226 6152743 ~ 6159313 (+)
G91180 NA non-coding upstream 23084 5927834 ~ 5928133 (+)
G91179 NA non-coding upstream 24469 5926358 ~ 5926748 (+)
G91178 NA non-coding upstream 24892 5924540 ~ 5926325 (+)
G91174 LOC107666555,LOC107747569,LOC107556920,LOC107733787,LOC107585221,LOC107695029 non-coding upstream 74478 5873007 ~ 5876739 (+)
G91127 NA non-coding upstream 181699 5769290 ~ 5769518 (+)
G91172 NA non-coding downstream 2374 5954891 ~ 5956598 (+)
G91250 gabrb1,LOC106937613 non-coding downstream 45925 5998442 ~ 6002062 (+)
G91324 NA non-coding downstream 417693 6370210 ~ 6370528 (+)
G91343 NA non-coding downstream 500227 6452744 ~ 6453076 (+)
G91492 NA non-coding downstream 741145 6693662 ~ 6699169 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other upstream 679970 5261036 ~ 5271247 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other upstream 752813 5177718 ~ 5198404 (+)
si:ch73-49p17.1 LOC107678601,LOC107727381,LOC107589548,LOC107708422 other upstream 953226 4992153 ~ 4997991 (+)
si:ch211-250c4.5 LOC107727386,LOC107699305,LOC107586489,LOC107708409,LOC107678597 other upstream 1255375 4561648 ~ 4695842 (+)
G90660 epcam,LOC107699293,LOC107727368,LOC107586477,LOC107707148,LOC107678540,LOC107707150,LOC108422531,LOC107723711 other upstream 1597286 4182499 ~ 4353931 (+)
commd8 commd8,LOC107666485,LOC107556927,LOC107733703,LOC107585230 other downstream 30001 5982518 ~ 5986979 (+)
akt3a akt3a,akt3,LOC107587843,LOC107666464,LOC107585250,LOC107666430,LOC103024575,LOC108422057,LOC106589689 other downstream 302086 6254603 ~ 6358017 (+)
LOC122356719 LOC107585299,LOC107733725,LOC107698728,LOC107711427,LOC107666365,LOC107711426,LOC107585285,LOC107733707 other downstream 1140627 7093144 ~ 7147218 (+)
sh2d4ba sh2d4ba,LOC107713884,LOC107666399,LOC107565924,LOC107743625,LOC107696870 other downstream 1819043 7771560 ~ 7787307 (+)
chchd1 LOC107713887,LOC107565922,LOC107743624,LOC107696882,LOC107666381,LOC107555316 other downstream 1883663 7836180 ~ 7838945 (+)

Expression


Co-expression Network