commd8 (commd8,LOC107666485,LOC107556927,LOC107733703,LOC107585230)


Basic Information

Item Value
gene id commd8
gene name commd8,LOC107666485,LOC107556927,LOC107733703,LOC107585230
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 5982518 ~ 5986979 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU135142
TGCAGTCCtatgattaaatacataaactcAAATACAAACACCCTGTCTGGTTCAGTGACAGTAAATTCTCCTTCAACATACTTGTGCACTGGCCTATAGCATGAGTGCAATTACAGAAGTCATACACGGATGATatgatactgtttttaaaaatactttttcctttttttggcaTTTGCTGTTGTAGGCATCTCAAGCCAAAAACACCATGTATGAATGATAGATGGCCTATCAAAAGTTAAATATGACTTCacttttatgtgtatgtgcgtgtattCATGCTGATTCTGGCTGGAGCGTGaatatgctttgtttttacattgccAGTCTTTGATTAGCATTAATGGAGAATTTCGTACTGAGCAGCTCATGTCCCAGTCAGATTGAAACAAAGAGTTGCAATGCAAGCAATTTATTTACATgccaaatgcattttgtgtgtatttctaaTATTATACTGAATATTAATGCAGGGCGTTGGAAAAGCCCTTGAAAGTACCTTTAATTTCGATTATCTATGGCACCCTTAAGTAATATTTGTTCTATAGAAAAGTGGAAATCCGTTCAGAATATTTCTACTCTGCTGTTGTATGTTAAACCctgtaaaatacatgtttttgttttttaaaggcaCAAGTTCAGCCATTAAgaagaaaaatctaatttgttaTTAAGTCCTATTAGCCATTTTGGTGAGCttgaataatatataactcACAGTGAATAGCACAGTTTAAAGCTAAATGCAATTGTGAAAGGTAAATACTGTGAAGTCACTTCCTATATAAATAGTTATAACTACATCCCTAAAACAATGCCCATATCTAAAATCATAGCTACATTTCGATTGCAATAATGTTAGGAATACTGAGTCGAATACTGAACAACAGGAACTGATATATCACTTTCCTGAAACCGTTTTGTCCTTTAAGCTCTTGCTAATGAATCtggattttatattttgggctttacagtataaaattcaACTGCTGCTATGAATGAAATATGCGGGATTTGTTGGTTCGTAAGAAAACGTAGAGAAAAACATGATGACATCATTCATCTTTCAATACCTGATATGttttaatgtacaaatttaCACACTGTGAGGACTCGTATCTTTAAACTCGTATCCTGCTTGTCATCATGTGTCGTCATGCTGATACATCCGTTTCTGGCAGGCTGACTTCATTTGATAATAGAGAAAAGTGTGTTACATATAGACAGATAATATTTGTTGAAGTGTAGTCTTAACCAAGCCCTATAAATACTGTAACCCAAATGGTGAGCTTTTTTGCCCATTTCTTAGTAGCAGAGTTATTAAAGTATTACTAAGACAAACAGGTTTAATCTACAGTATGTGATGTGTCTAAACTGGGGCAGAAGGTTTTCGTTTTAAAGGAATGTTCCAGGTTTTCGTTCAAATTAAGCTCTTC
>XM_043254562.1
TAGTATGTAAAATGATTCGTTAATAAATAGCCACCATGGATGTGTATCTTAGATCTATGATCCTAACAGTGTGCAGCGCAACATCCTGAAGACTCGACAGAAGACGAAGTCACGTGACATCTGATCAGCTGACATCATTGACGCTGAGGAAGACGGCTGATAGCATTATGATAAAATTTCTCGAAAAATTACCGTCTGAAGAATGCCCCAAACTCCTGCACAGGGTGGTGGATGGGGTGTGCGGCCGCAGTGGACCGAGGCGGACAGATTACGGTGAACGGTGGAGTCTAACAGAGTGGGTGGAGTTAACGAACACTCTCTCCTCTTTTATCCGCTTTGCTGTGGGAAGGGGCTGTTCAGATCAAGAGATCCAGGAGCTGTTGAGCGAGTTGGACACGGCCCATGCTGAGGCTGTTCTCCAGTGTGTACACTCCAGGTCTGAAGAGATCAGGCATGCTTTGGTGGACAGAACCAATGGCATCTCAAGCACACAGCTTCAGGATTTCAACTGGCAGTTGAAGCTGGCGTTATCCAGCGACAAGCTGTCCGCTTTAAACACTCCTCTGCTAAATCTCAGTCTGGACCTGAAGGAGAATGGAATTCAGAGATCAGTGAATATAGAAATGAACAAAGAGGAGCTGCAGACTCTCATCAGTGCACTAGAGGCTGCTAATAAGGTTGTGTTGCAGCTGAAATGAAGATGGCAGCGAAAGATGGTTCTGTGCCATCATACTTTCATAGAGAGGATTTCTGAGCTCTGAATTATGAGACGATGCCTGAGCAAACGGAAACCCTACGGACAGAACTGGGAACCTGCCGGTGACTCTTCTGAGGTCTTCACGAAGGACTGAATGTTATTGTTCAAGCTCCATCAGCATGGACCACCGATGACTTGAAGTGGTGGCAGGGTCATTTTGAGGCTGAGTATTTTGCACTATGAGAAGCTAAATGCCCGAAACAGATCTTGCTTCTCGGTTCTCCATGAAATtcgaatgcatttttatttcacaccCCAAACGGTTGACTttctaaataaagtaattaaaaacattaaatgtcagCACTTGAATGGTGATTTCTTCCTTTCTGAAAATGCAAGTTAACATAATGACTAATAGGCAGAGACCCTCAGACTTTTCAACACGATCATGTGACACAGCTCACTTGTAATCCTGAATTTCAGGTTTGGTGTGCACATGTTAAAGAGGACTAAATGCTGTATGAACGGAATTTTGTCTTCATTACTGTAGGATCATCTTAGGTCCATTCCATGAAGAACCGTGGGTGACTGgtttgacactttttttatttttagtaattttttagtTAGTTCATCATTGATTATTAGTCTTCCCAGATCACAAAAACACCATGTGGTAAtgcaaaggggaaaaaaaggaaatggagTACAAAAATCAGATCTGCACATTATGCTTGGtgagatattttatttgaattcattcaaaatgtctatgatttaaaataaagtatccTTAAGAACAACTGGTTGCAGTCCtatgattaaatacataaactcAAATACAAACACCCTGTCTGGTTCAGTGACAGTAAATTCTCCTTCAACATACTTGTGCACTGGCCTATAGCATGAGTGCAATTACAGAAGTCATACACGGATGATatgatactgtttttaaaaatactttttcctttttttggcaTTTGCTGTTGTAGGCATCTCAAGCCAAAAACACCATGTATGAATGATAGATGGCCTATCAAAAGTTAAATATGACTTCacttttatgtgtatgtgcgtgtattCATGCTGATTCTGGCTGGAGCGTGaatatgctttgtttttacattgccAGTCTTTGATTAGCATTAATGGAGAATTTCGTACTGAGCAGCTCATGTCCCAGTCAGATTGAAACAAAGAGTTGCAATGCAAGCAATTTA

Function

symbol description
commd8 Orthologous to human COMMD8 (COMM domain containing 8).

NR:

description
PREDICTED: COMM domain-containing protein 8-like

GO: NA

KEGG:

id description
K22564 COMMD8; COMM domain containing 8

RNA

RNA id representative length rna type GC content exon number start site end site
TU135142 False 1436 lncRNA 0.34 1 5985544 5986979
XM_043254562.1 True 1923 mRNA 0.41 5 5982518 5985958

Neighbor

gene id symbol gene type direction distance location
LOC122357047 enpep,LOC107747565,LOC107666571,LOC107585235,LOC107667073,LOC107733706 coding upstream 35616 5936401 ~ 5946902 (+)
lrit3b lrit3b,LOC107556923,LOC107666384 coding upstream 46934 5930197 ~ 5935584 (+)
nsd2 LOC107747575,LOC107666517,LOC107556918,LOC107733764 coding upstream 174642 5795240 ~ 5807876 (+)
fgfr3 fgfr3,LOC107733743,LOC107666479,LOC107556915 coding upstream 241628 5708521 ~ 5740890 (+)
ky LOC107666377,LOC107747591,LOC107556906,LOC107733664,LOC107695013,LOC107568638 coding upstream 408085 5567502 ~ 5574433 (+)
pprc1 pprc1,LOC107666421,LOC107747555,LOC107569410,LOC107667059,LOC107733763,LOC107585240 coding downstream 91238 6078217 ~ 6087501 (+)
oga mgea5,LOC107666422,LOC107585241,LOC107667060 coding downstream 101973 6088952 ~ 6101193 (+)
npm3 npm3,LOC107666424,LOC107569414,LOC107747554,LOC107667062,LOC107585242,LOC107733732 coding downstream 114652 6101631 ~ 6103986 (+)
arl3a arl3,zgc:110197,LOC108263849,LOC103033567,LOC107733731,LOC107747553,LOC107667061,LOC103145158 coding downstream 117147 6104126 ~ 6107776 (+)
zmp:0000000662 zmp:0000000662,LOC107666523,LOC107747548,LOC107733769,LOC107667074,LOC107585245,LOC108421699,LOC108263473,LOC107569423 coding downstream 165764 6152743 ~ 6159313 (+)
G91172 NA non-coding upstream 25920 5954891 ~ 5956598 (+)
G91180 NA non-coding upstream 54385 5927834 ~ 5928133 (+)
G91179 NA non-coding upstream 55770 5926358 ~ 5926748 (+)
G91178 NA non-coding upstream 56193 5924540 ~ 5926325 (+)
G91174 LOC107666555,LOC107747569,LOC107556920,LOC107733787,LOC107585221,LOC107695029 non-coding upstream 105779 5873007 ~ 5876739 (+)
G91250 gabrb1,LOC106937613 non-coding downstream 11463 5998442 ~ 6002062 (+)
G91324 NA non-coding downstream 383231 6370210 ~ 6370528 (+)
G91343 NA non-coding downstream 465765 6452744 ~ 6453076 (+)
G91492 NA non-coding downstream 706683 6693662 ~ 6699169 (+)
LOC122356144 NA non-coding downstream 736301 6723280 ~ 6755554 (+)
lamtor3 lamtor3 other upstream 30001 5951217 ~ 5952517 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other upstream 711271 5261036 ~ 5271247 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other upstream 784114 5177718 ~ 5198404 (+)
si:ch73-49p17.1 LOC107678601,LOC107727381,LOC107589548,LOC107708422 other upstream 984527 4992153 ~ 4997991 (+)
si:ch211-250c4.5 LOC107727386,LOC107699305,LOC107586489,LOC107708409,LOC107678597 other upstream 1286676 4561648 ~ 4695842 (+)
akt3a akt3a,akt3,LOC107587843,LOC107666464,LOC107585250,LOC107666430,LOC103024575,LOC108422057,LOC106589689 other downstream 267624 6254603 ~ 6358017 (+)
LOC122356719 LOC107585299,LOC107733725,LOC107698728,LOC107711427,LOC107666365,LOC107711426,LOC107585285,LOC107733707 other downstream 1106165 7093144 ~ 7147218 (+)
sh2d4ba sh2d4ba,LOC107713884,LOC107666399,LOC107565924,LOC107743625,LOC107696870 other downstream 1784581 7771560 ~ 7787307 (+)
chchd1 LOC107713887,LOC107565922,LOC107743624,LOC107696882,LOC107666381,LOC107555316 other downstream 1849201 7836180 ~ 7838945 (+)
zswim8 LOC107666425,LOC107565928,LOC107713895,LOC107743573 other downstream 1871719 7858698 ~ 7886690 (+)

Expression


Co-expression Network