RNA id: XM_043254562.1


Basic Information

Item Value
RNA id XM_043254562.1
length 1923
RNA type mRNA
GC content 0.41
exon number 5
gene id commd8
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 5982518 ~ 5986979 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGTATGTAAAATGATTCGTTAATAAATAGCCACCATGGATGTGTATCTTAGATCTATGATCCTAACAGTGTGCAGCGCAACATCCTGAAGACTCGACAGAAGACGAAGTCACGTGACATCTGATCAGCTGACATCATTGACGCTGAGGAAGACGGCTGATAGCATTATGATAAAATTTCTCGAAAAATTACCGTCTGAAGAATGCCCCAAACTCCTGCACAGGGTGGTGGATGGGGTGTGCGGCCGCAGTGGACCGAGGCGGACAGATTACGGTGAACGGTGGAGTCTAACAGAGTGGGTGGAGTTAACGAACACTCTCTCCTCTTTTATCCGCTTTGCTGTGGGAAGGGGCTGTTCAGATCAAGAGATCCAGGAGCTGTTGAGCGAGTTGGACACGGCCCATGCTGAGGCTGTTCTCCAGTGTGTACACTCCAGGTCTGAAGAGATCAGGCATGCTTTGGTGGACAGAACCAATGGCATCTCAAGCACACAGCTTCAGGATTTCAACTGGCAGTTGAAGCTGGCGTTATCCAGCGACAAGCTGTCCGCTTTAAACACTCCTCTGCTAAATCTCAGTCTGGACCTGAAGGAGAATGGAATTCAGAGATCAGTGAATATAGAAATGAACAAAGAGGAGCTGCAGACTCTCATCAGTGCACTAGAGGCTGCTAATAAGGTTGTGTTGCAGCTGAAATGAAGATGGCAGCGAAAGATGGTTCTGTGCCATCATACTTTCATAGAGAGGATTTCTGAGCTCTGAATTATGAGACGATGCCTGAGCAAACGGAAACCCTACGGACAGAACTGGGAACCTGCCGGTGACTCTTCTGAGGTCTTCACGAAGGACTGAATGTTATTGTTCAAGCTCCATCAGCATGGACCACCGATGACTTGAAGTGGTGGCAGGGTCATTTTGAGGCTGAGTATTTTGCACTATGAGAAGCTAAATGCCCGAAACAGATCTTGCTTCTCGGTTCTCCATGAAATtcgaatgcatttttatttcacaccCCAAACGGTTGACTttctaaataaagtaattaaaaacattaaatgtcagCACTTGAATGGTGATTTCTTCCTTTCTGAAAATGCAAGTTAACATAATGACTAATAGGCAGAGACCCTCAGACTTTTCAACACGATCATGTGACACAGCTCACTTGTAATCCTGAATTTCAGGTTTGGTGTGCACATGTTAAAGAGGACTAAATGCTGTATGAACGGAATTTTGTCTTCATTACTGTAGGATCATCTTAGGTCCATTCCATGAAGAACCGTGGGTGACTGgtttgacactttttttatttttagtaattttttagtTAGTTCATCATTGATTATTAGTCTTCCCAGATCACAAAAACACCATGTGGTAAtgcaaaggggaaaaaaaggaaatggagTACAAAAATCAGATCTGCACATTATGCTTGGtgagatattttatttgaattcattcaaaatgtctatgatttaaaataaagtatccTTAAGAACAACTGGTTGCAGTCCtatgattaaatacataaactcAAATACAAACACCCTGTCTGGTTCAGTGACAGTAAATTCTCCTTCAACATACTTGTGCACTGGCCTATAGCATGAGTGCAATTACAGAAGTCATACACGGATGATatgatactgtttttaaaaatactttttcctttttttggcaTTTGCTGTTGTAGGCATCTCAAGCCAAAAACACCATGTATGAATGATAGATGGCCTATCAAAAGTTAAATATGACTTCacttttatgtgtatgtgcgtgtattCATGCTGATTCTGGCTGGAGCGTGaatatgctttgtttttacattgccAGTCTTTGATTAGCATTAATGGAGAATTTCGTACTGAGCAGCTCATGTCCCAGTCAGATTGAAACAAAGAGTTGCAATGCAAGCAATTTA

Function

GO: NA

KEGG:

id description
K22564 COMMD8; COMM domain containing 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135036 lncRNA upstream 25920 5954891 ~ 5956598 (+) True G91172
TU135032 lncRNA upstream 30001 5951230 ~ 5952517 (+) True lamtor3
TU135046 lncRNA upstream 54385 5927834 ~ 5928133 (+) True G91180
TU135045 lncRNA upstream 55770 5926358 ~ 5926748 (+) True G91179
TU135044 lncRNA upstream 56193 5924540 ~ 5926325 (+) True G91178
TU135152 lncRNA downstream 12484 5998442 ~ 6002062 (+) True G91250
TU135249 lncRNA downstream 268645 6254603 ~ 6261915 (+) True akt3a
TU135252 lncRNA downstream 268645 6254603 ~ 6358016 (+) False akt3a
TU135248 lncRNA downstream 293601 6279559 ~ 6291443 (+) False akt3a
TU135268 lncRNA downstream 384252 6370210 ~ 6370528 (+) True G91324
XM_043256152.1 mRNA upstream 30099 5951217 ~ 5952419 (+) False lamtor3
XM_043256229.1 mRNA upstream 35616 5936401 ~ 5946902 (+) True LOC122357047
XM_043254815.1 mRNA upstream 46934 5930197 ~ 5935584 (+) True lrit3b
XM_043256160.1 mRNA upstream 174642 5795240 ~ 5807876 (+) False nsd2
XM_043255826.1 mRNA downstream 92259 6078217 ~ 6087501 (+) True pprc1
XM_043255828.1 mRNA downstream 92432 6078390 ~ 6087501 (+) False pprc1
XM_043255888.1 mRNA downstream 102994 6088952 ~ 6101193 (+) True oga
XM_043255889.1 mRNA downstream 102994 6088952 ~ 6101193 (+) False oga
XM_043255892.1 mRNA downstream 115673 6101631 ~ 6103986 (+) True npm3
TU134595 other upstream 984622 4992327 ~ 4997896 (+) False si:ch73-49p17.1
TU134239 other upstream 1738477 4182499 ~ 4244041 (+) False G90660
TU134245 other upstream 1738477 4182499 ~ 4244041 (+) False G90660
TU134242 other upstream 1738477 4241132 ~ 4244041 (+) True G90660
unassigned_transcript_1924 other upstream 1910619 4071806 ~ 4071899 (+) True trnai-uau_4
unassigned_transcript_1926 other downstream 1145468 7131426 ~ 7131496 (+) True trnag-gcc_68
TU135767 other downstream 1850232 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 1872740 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 2320528 8306486 ~ 8310824 (+) True G91833
XR_006252358.1 other downstream 2680310 8666268 ~ 8683052 (+) False pcnx2

Expression Profile