RNA id: XM_043255889.1


Basic Information

Item Value
RNA id XM_043255889.1
length 5054
RNA type mRNA
GC content 0.43
exon number 16
gene id oga
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6088952 ~ 6101193 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCAGTTTTCCGAGTCTGCGCAGTAAGTGTAAACAGGAAGAAGAGTGCAAAATTAAACAGCGTCGAAGAACGCAACGTTACATTGGCATGATCTGGTTGAAGTCGCCATGCAGGTGTACAGTAAGCTTAAACGTGCTTAATTTATGACTAGCGCACGATGCAACGCGACTCGGCAAAAGCTATCAGACGAAGCGTCGCGTAATGCTTGTCGGCGGTTCTGACATCGTTGAAACACGGTTCCCGTTCGCTTGCTAGAGAGCGAGCAGACTGTTAAGATATAACGTAGCGCAGAAAGCTTTTAGCGCTGTAGGTTACGTGACTGCTTGTCGTGTTTGTTAACGAAGAAATCTGCGGGTAGTTCATGGAGACAACCTGCATCCGTTAGAATCCCGCTCCCTACCGGTGACTCAATGGCCTACTAACCCAGTAACGTCGGGGAATCTGGTAACGGGTTAACGTTAGTGTTCCTGCGGAAGAAAACCTTTGGCTTGCGACTAGACGGTTACTTCCATCACGGTTTATTGAGTACGGTTCAGCATGGTTCAGAAAGACAAAATAATCGAGGCGTCGCAGCCGGAAAGTGAAGCAAACCCAGTGTCGAGCGAAGCTGTGGCGGATACGCAGTGTCCGGTGGACGAGCCCAGTATCGGGGTTGAGCGGACAGGCCGCAGGAAATTCATCACTGGGGTCGTGGAAGGCTTCTATGGACGGCCATGGACTATGGAACAAAGAAAAGAGCTTTTCAGGAGgCAGCAGAAATGGGGTTTGAACACCTATCTGTATGCCCCAAAAGATGACTACAAACACAGAATGTTTTGGAGAGAAATGTATTCTGTTGAGGAAGCagAGCAACTCACAACTTTAATAAGTGCCGCTAAAGAGCATGGCGTTGAGTTCATTTATGCCATTTCCCCTGGCCTGGACATTACGTTCTCAAATCAGAAGGAAGTGTCGACACTTAAAAGGAAGTTAGACCAGGTCTGTCATTTTGGGTGCAAGTCCTTTGCCTTACTGTTTGATGACATTGATCATAACATGTGTCCAGCGGACAAGGAGGTGTTCAGCTCCTTTGCACATGCTCAAGTGTCTATCACCAATGAGATCTTCCAATATTTGGGAGAacctgaaatatttttattttgccccACAGAGTATTGTGGAACATTTTGTTATCCAAACGTGTCACAGTCGCCTTACCTGCGCACAATAGGTGAAAAGCTGCTTCCTGGTATCGAGGTGCTGTGGACAGGTCCCAAGGTAGTTTCTAAAGACATAACTGTTGAATCTATCGAAGAAGTCACAAAGATACTGAGGAGAGCTCCTGTCATCTGGGACAATATTCATGCTAATGACTACGATCAGAAGAGACTTTTCTTGGGGCCTTATAAAGGCAGGTCCACAGAACTCATCCCTCGGCTGAAGGGAGTCCTCACCAACCCCAACTGTGAATTTGAGTCTAATTTTGTGGCTATTCACACGTTAGCCACATGGTATAAGTCTAACATGAATGGAGTGAGAAAAGATGTTGTCATGACGGACAGCGAAGACAGCACTGTGTCCATCCAGATAAAGCTGGAAAACGAGGGCAGTGATGAGGAGCTAGAAACAGACATCCTCTACAGCCCACAGATCGCGCTCAAGCTGGCTCTCACTGAATGGCTGAGCGAGTTTGGAGTACCACATCAGTACAACAGTCGGCAGGTTCCTCACAGTGGAACTAAAAGCACTTCTATAGATGTTCCTGCACTTACTGCGCCCACTCTGGGCACTTCCACCACAGTGACTACAGTCTTCCAACAGCCCATCATGAGTCCAGCCGTGCCCCTTGGCGATGAACCGCACGTGCTCGGCAAAGAAGAGGAGGTGGAGGTAGAGAAGAAAGAGTTCGATGAAGAACCCATGGAGATGGTCGTGGAGAAACACGACGAGGTGGAAGACACCAAAAATGTCAACCAGATCCTCACAGAGATCGTCAAAGCTAAAATGACAGAAGATCTCAAACCCATGGACACAGACAAAGAGAGCCTGACCGAGTCCAAGTCCCCAGAGATGTCCATTCAAGAGGATTCGGGCAGCGACATTGCACCGATGCAGACCGATGATCAGCTCAATAAAGACATGTTTGTCCCAGGCCCCAATGAGAAGCCGCTGTTTACTGCTGAGCCGCTTACTCTGGAGGATCTGACCCTGCTAGCTGAACTTTTCTACCTGCCGTACGAACACGGCCCTAAAGCAGTACAGATGCTGAAAGAGTTTAACTGGCTCAGAGCCAACAGCAATTATGTTAGCGTTAACTCCAAAGCAAAGGATCCAGAGAAGGTAGCTGAATGGCAATCCAGAGCGGAAAAATTTGAGGAGATGTGCTGCTCAGTCATCCAGATGTTCACCAGACTCTCCAACTCAGTCAACAGGACCATTCTTTATGACCTGTATCCCTATATCTGGGATATAAAGAGTATCATCTCAATGGTGAAATCATTTGTTCAGTGGTTAGGGTGTCGTAGTCAGTCGTCAGCACAGTTCTTAAGTGGCGACCAAGAGCCCTGGGCCTTTAGGGGCGGTCTAGCAGGAGAGTTCCAGAGATTGTTGCCAATTGATGGGGCAAATGATCTTTTCTACCAGCCACCACCACCATTGCCAACTTCCAAAATCTATACCATAAGGCCTTACTTTCCCAAAGATGAGTCTGCCATCTACAAGATCTGCAAAGAGATGTTCACTGAGGGCTGCGAGGGCATCTCTTTCTCCGATGAGTCACCTGACCTCATTGGAGACAGGTTAGTGGGAGGTTTCCTGACGCTCAGCCCAGACTATGGATTTGTGCTCGAGGATGAGGAAGGTATATGCGGCTACGCTCTGGGCACTGTGGATGTCAAACCTTTTGTGAAGAAATGCAAGATGAGTTGGATTCCATTTATGCAGGAGAAATACATCAAGCCAGACACAGAGAAGGACCTGTCAGAGGCTGAGaaAATGATGCTAAGTTTCCATGAAGAGGAGGAAGGCTTGCCAGAGTCGTTCCTTAGTAACTTCCCATCTCTCATTAAAGTGGACATTCATGCAAAAGTTACTGACCCCAGTGTTGCCAAAAGCATGATGGGATGCCTCCTCTCATCATTGAAAGCCAATGGTTCACACGGTGCTTTCTGTGAGGTCCGGCAGATGGACAAAAGGATGTTGGACTTTTATAGTAAACTGGGCTGCTTTGAAGTGGCCAAAATGGAGGGATTCCCAAAAGACATTATTATAATGGGGAGGAGCTTGTGAATCTAAACCTCCAAGAAGAAAGTGTACAGAGGGAGCCTCCCAGAAATTGCACAAAGCTTCGGCCCCAACACGCTACCTGTTCATGTAACTATAGCAAGTTTTGTAATAGCAACTCTGGTGGCCTGTAGCTTCATTCACATCGTTCGCCGAATGCACTTCTAGAATTTTAGTTGCTGTTCATTCACTTGGCCAGTGTGTGGAAGAAGTTCAAAGAGAGTGtgcacatatgcacacattGGTGTGTtcagaaatggaaaaagaatTGAAGTGGGTCTGCAAGGGTAATTCAGGATGCATGAGTtacttttgaggtttttttttttttttcctggtggGCCGTTTGCTTGAGTTGGCTAAGTGCCATTGAACCCACTAAATCTTTTAGGTATGGCCGAGTTGCAGTTTGTGTTCAGCATATGCGCATGTTTAAGTTAACATCTAGAATCTCCAGGCTAAAAACTTGCCATTACTTGATAGCAGACATCTTCACTTTGCCGTTTTTAATAGTTCATTTCAGTGCTTTACAATGTTCAAAGCAATAATCTAGAAGGACTTCTTAACAGTCAGGGTTTGTGTTATTGCTTTCCAGGACATTGTAGTAAATTCTGCCGTTTTCCAGGTTCAAACGGTGTCTGTGAGCTCTCGTACGGAGAACGCGGCAGGCTAAAGCTATCCTTTGAGGTTTGGGATGCTGTTCTGGTGttgtttagaaaagaaaaaaactgtactttGAGCAAGCAGAAGTAAATACAGTTAAAGTCTGTTGTCTTTAAGACCGCATGGGATACTTTTGTGTAAGCCTTTAGCATGTGTATCTTTTAGTgatacagttttttattttgtacaaaaatgcCTTTTGGCTTTTGCCCTCATCCTGCATATATTTGAGGGTTGTGAGAAGTAATTTCCtacatttccttttttgtttaaaatggttAATTATACAGTTCTGAGACAATAGGGTTACATTACAATTCTGAAATGCTGatgtttaccaaaaaaaaaaaaaaaaaaaaaaaagtattgtaaaCATCAAGACCAAATGCCCTGTCTCTTAATTagactgaaaactgaaaataaatgaaggtACATTAGTGGattatctttaaaatacatgagatttttttttctgctgcctGAAGAGAATAACTTTGCTTGTTCTTTAATGAAAGTCTGCCTGTGTCAACATATTTGAAGTTCCCTACAGTTGAAGTTGGGTTTCTCTGAAATCCACTCTGCATTGTCAGTGCTAGGATTGTTTTCCTGAATGTAGGTGCAAAAGAAACTGTTTATTCTGTATTTACTccctttttttaaccaaaattactgttgtttttgtttgtttgtttttttttttgtattattatttttctgtattgtgCTATATTTTGGAAAAACTAAACGAGCACAAAAGGCTCCTGCAGATTTCtgtatgtaatgtttaaaatgcctGAGTTAAAGAAAGATGTAAATAGTTTTGTGCATGTGAAGGGCCAACagtttgacagtttttttttcaccccatTTAAGGGAAATTTGTACGCAAAAATAGCTATTGTTTATCTCTATATGGCTTgttgcttcattttcttttggttGATCACATCCAATGTAaagggcttttttttctttcttttttaaggtCACAttcaatgcatatatttaaaaaatgaagacctttctgtattttgatgtaattatgattatgtatatgtaaaatagtTGTAATTTCTGTAAGGGTTGTATGTAATTAAGATGgctattaaaatgttacatagaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135152 lncRNA upstream 86890 5998442 ~ 6002062 (+) True G91250
TU135142 lncRNA upstream 101973 5985544 ~ 5986979 (+) False commd8
TU135036 lncRNA upstream 132354 5954891 ~ 5956598 (+) True G91172
TU135032 lncRNA upstream 136435 5951230 ~ 5952517 (+) True lamtor3
TU135046 lncRNA upstream 160819 5927834 ~ 5928133 (+) True G91180
TU135249 lncRNA downstream 153410 6254603 ~ 6261915 (+) True akt3a
TU135252 lncRNA downstream 153410 6254603 ~ 6358016 (+) False akt3a
TU135248 lncRNA downstream 178366 6279559 ~ 6291443 (+) False akt3a
TU135268 lncRNA downstream 269017 6370210 ~ 6370528 (+) True G91324
TU135295 lncRNA downstream 351551 6452744 ~ 6453076 (+) True G91343
XM_043255826.1 mRNA upstream 1451 6078217 ~ 6087501 (+) True pprc1
XM_043255828.1 mRNA upstream 1451 6078390 ~ 6087501 (+) False pprc1
XM_043254562.1 mRNA upstream 102994 5982518 ~ 5985958 (+) True commd8
XM_043256152.1 mRNA upstream 136533 5951217 ~ 5952419 (+) False lamtor3
XM_043256229.1 mRNA upstream 142050 5936401 ~ 5946902 (+) True LOC122357047
XM_043255892.1 mRNA downstream 438 6101631 ~ 6103986 (+) True npm3
XM_043255890.1 mRNA downstream 2933 6104126 ~ 6107776 (+) True arl3a
XM_043255891.1 mRNA downstream 2933 6104126 ~ 6107776 (+) False arl3a
XM_043256102.1 mRNA downstream 51550 6152743 ~ 6159313 (+) True zmp:0000000662
XM_043256103.1 mRNA downstream 51550 6152743 ~ 6159313 (+) False zmp:0000000662
TU134595 other upstream 1091056 4992327 ~ 4997896 (+) False si:ch73-49p17.1
TU134239 other upstream 1844911 4182499 ~ 4244041 (+) False G90660
TU134245 other upstream 1844911 4182499 ~ 4244041 (+) False G90660
TU134242 other upstream 1844911 4241132 ~ 4244041 (+) True G90660
unassigned_transcript_1924 other upstream 2017053 4071806 ~ 4071899 (+) True trnai-uau_4
unassigned_transcript_1926 other downstream 1030233 7131426 ~ 7131496 (+) True trnag-gcc_68
TU135767 other downstream 1734997 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 1757505 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 2205293 8306486 ~ 8310824 (+) True G91833
XR_006252358.1 other downstream 2565075 8666268 ~ 8683052 (+) False pcnx2

Expression Profile