RNA id: XM_043255828.1


Basic Information

Item Value
RNA id XM_043255828.1
length 4123
RNA type mRNA
GC content 0.47
exon number 14
gene id pprc1
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6078217 ~ 6087501 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAGGTAAGACCATCACGCGTCGATACTCAGAGAGCGTCGCGCCGGAATGAAAAGGTTGACATTTATCGCGCTCGAGGCAAATGCGCGATGATGTGCGGGACTTTGTGACACGTGGATGGCGATGGTAGAAAGCTTCGCTGCCAGCTGTCTGGAGTATCCTGGCCTTAGCAATGGAGATGCTCTGGAGGCTTTACAAGGCTGCCTTGATCCTTCTATTTTGTCCATTTTTGAAGACAGCCCCACTGGAGAAGTTAAAAGTAATATCGATGAGGAAAGTGAAGCGACACTGCTCACAGCTCTCACTGAAATACTTGACAATGTTGATGATGAAAACTTGTCCCCTTTTGACACCCTGCCGGATTCAGACCTGTTCTCGGGTCAGAAGGGTCAGGAACATTCACCACTAAGAAAGTTCCTCACACGGTCTCCTCCAGAGTCAATGATTTACACAAGACAGTTTCCTGGGAAGagtCTCCCGCGAATGCAAAGAGTGTCCCAGCAGAACAGTGAAGGAGAAGAGGAAGATGGAGACACTAGTTTTTCAACCCCAATAGCCAATATTGATTTGTCATCACTGGATGAATTTGACTGGTGCCTTCCTGTGTCATTAGAGCAGGATGGAGAGAGCATGCCTGTCACTCTCAGTGATTTAGTAAAACACATGCACCCTTACTGCATGACATTGTGTGTAGAAGGAGAAGAGGGCCAAGAGCATCTTCTGCCCGAGAGGGGCTTAGTGTTAGAAGTGGTTGATCAAGGAGAGCACGGAGAGCCCATCCTAGCAATCCCAGATCTCAGCATCCCTCTTCCTCACACAGACTCTGCAGAAGGTGAACAAAGAGTCCCCGAGAATAGCATAGACAAACCAGAACCCAAGCCTGAAAAAGTCCCACCTCCTTCTACAGTATCTCCTGTGGAGGAGGAGAAAAAGGCTGTCAAGGTAcgtaaagagaaaaagaaaagtaaactaCTTGAAGCCCCTCCTGTTGAACAGAGAGTTTTAAGAAGCTCAAAACTTAAGGAAGAGCCACAGAAGAAACGCccggaagaacaaaagaagaaaaaggtgaCTTTCTCACCTGTGCTCTCATTAGCAGTGCCCAAAAACCCTAAACTTGATCGTCCTACAGAGATGACAACCCTTAAACCGCAGGTTGAGAAGGAGCATATCCCAATGCCTCAAGCTGAAGCAAAGAAAACTGACTCACAGCCAGAGAACAAACCTCTTGAAAAATCAGTGGAGGAAGAACCACCCTCAAAAGAAGAGCCTGTTAGCGAACAGCCTGCTGTTTGTCAGCGTAATGAAATTAAGCCCAAGCCTCTCAGTTTACAGCAGTACCGTCTCCTTCGCCAACAGAAAAAACCGGATCCTGTGGACAAAACGGAGGATTACAGCACTAAATGGCCCAAGTTGCCTGAAACTCCCAAGGAGCTTCCCCCAATACCCTGCCTGCCTGACCCCAACCCCAGAGATCCACGAAAAACTACGCATACTCCTGTTAAAAAAGACCTTGCACCTGAAATCATGCCTGCATGGCACCCGAGAGGCCCTGCTGCTCCCCCAACGCCTGAAGCCTTGCTCATCCCACCGGCCTCACTGATAGCTTCCTCTAAGAAACCTGCAGCTGCTAAACCAACCCCTCCACCTTCTGAAACATCTAAAAGTTCACCTCAATCAGTCCACCCCTCACCCCAGAAACTACCTGTTCCCATCGGTGTGCCACAAAACACTAATCATACTGAGTCCTCTACCCCCATTAGACATGTGTCTGAAGTGGCCCCTGAAAGGACCGTTTCATTGTCAGTGTCTACTACATCTGGAGGCCCTCAAGGTCTTAATGCACATAAGGAATGTTTACATGGGGACCTCAGTGTTGCTCCCGCAAAGCCTCAGATGGTCACTACACAAGTCCAGAGCTCAAACTCTAGCCCTCATAAACCTCGTGTTGCTGTGCCTCTGAAGAGAGAGACCGAGCAGGTTGTTTTGGCCCCTGTGTCAGATCAAGCCAAAAACACCCTGCCAACTAGTTCTAAAAAGCTGACCTCACGGTCACAGCCTCATGTTGCACCAATAGCTGCTCAGCCGTTTTTCTCGGCTCAAGTTCAGGCCAGAGTTGTTGAACTGGCAGAGCAGATGAGGATGGCTTCCTCTGATATCCCCAAACCGAAGAACACCACAGTTGAGCTGATTGAATCCTTCACAAGTGAAATTGgtaTTGAAGCTGCTGATCTTACAAGCCTCTTGGAGCAGTTTGAGGAGTCTCAGTCCAAAGAAGAGCAGAGTGTACCGGAGGTCTGTGGTAGAGCAGCCGCTGTAGGAAACTCCAGTTCAGATCAGCAGGTGGAAACTAAAGCAGTGGAGAAAATCCGCAACCATGACCTGGGAAGCACAGCAGGCCTTACACCTCCTGCTACGCCCCCACACCAGATGTGGAAGCCTATAGCACCAGTTTCATTACTGGGGAAAACCAAAAAGCCAGAGGTCCTTAAAGCAACACCTAACAAGGCCATTCAAATAGAGGCAAGGCCACTACCATCAAATAAGCTGCGCAGCAAGCCTCAGAGCCCCACTACTACTGGACAGACTCAGCCTTTCTCCCTTGATCATGACTACTGCCTCCCTCCAAAAGAAGATGGTCAAAACGAAGTTGGCAGTCGGTGGAATGTCAAACAACAGCCTAGCATCATAATCAAGACGGTTGAGCTGCCGGCCAGCAAGCCAGCCCAGAGCAGCATCTCCAAAGCTCCAACTGCTCTTTCAGCTACAGAAGGAACCCAGAAAAATGTTAGCCTCGGTCAAACTTCTACAGATACGAGGTGCACATTAAATAGCTCCGCCATGGAGACTCCAGACGCCTCTCCAAGCAGGCCTGACCCTGAGAGCTCTTTACTGGATGATGCAAAATGCGACCAGCAGAAATCTGCAAACTACTCTGAGTGTTCCTCTAGACAGTACCAGGAGGACAGGGGCCGCTCGAAGCGAAGATACAGAGCCCAGTCCTCCAGTAGCTCAGAATCCAGCTCCGAGTCCTCCTCCAGATCACGTTCACCACCCAGTAAAAGATACAGGTCTCGTCGCTCAAGCAGCAGATCCAGTTCTTCATCTCGGTCTCGTTCCCGATCCAGCTCGAGGTCATTTTCCCCGCCCCGCCGGCGACGGTTTTCATATTCAAGTTCACGCTCTGGATCCTGGAGCCGCAGCCGCTCTCGATCCAGATCCCGCTCCTCTGACATTGGACATCAGCGCTGGAAAAGCCACAGAAGCCCTAATCAGACATCTGTTTACCGGTATTCACAAAATCCCAGAGAGGATTCAAAAAGAGGCAAGGAGAAAGCAATTGAGGAGCGAAGAGTTGTTTATGTTGGACGGATTCGTGGAAGCATGACTCGTAAAGAGCTGAAGGAACGCTTCTCATTCTTCGGAAAGATTGAGGAGTGCACTGTGCACTTTAGAGAAAATGGGGACAACTACGGCTTTGTTACATACTACAGCACGAAGGATGCATTTAATGCCATTGAGAACGGAAGCAAGCTGAGGGAGCAGAATGAGCTTCCTTTTGACCTGTGCTTTGGAGGCAGGAGACAGTTCTGCAAAACCAGTTATGCTGATTTAGattcaaaCCGGGAGTACGAACCCCATCCTACAAAAGGCAAATTTGATGCACTAGACTTTGACACTTTACTCAAACAGGCTCAAAAGAACCTGAAAAGGTAACGATTAGTCAAGCGGCAAGAGAGACGAACGATTACCTCTGAGCAAAATGCTGCCCCACACTTCCAGTGTTGCCtctcaattattatttttggttgtttttgtttgttttttttctttgtgtttttgtttgtttctgcaaGTTTACACCTTCTATTGAAGTGAAGATTTGTAAGAAAAAcctaaagtgcaaaaaaaaaaaaaaagaaatctaataaAACTGTGGaatgaaatagaattttttaaaaggattaactttatttaaatgtttaatctgaATTGCTGAATgttggatacatttttaaatgagctgAATGGAAACATTATGTTGGGGGAAAACAGGTTTACCATGCTGAATTTATTTCAACCTAAATAAACCTGAGATAAATTGTCTTGTCTGAGATTAAAAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135152 lncRNA upstream 76328 5998442 ~ 6002062 (+) True G91250
TU135142 lncRNA upstream 91411 5985544 ~ 5986979 (+) False commd8
TU135036 lncRNA upstream 121792 5954891 ~ 5956598 (+) True G91172
TU135032 lncRNA upstream 125873 5951230 ~ 5952517 (+) True lamtor3
TU135046 lncRNA upstream 150257 5927834 ~ 5928133 (+) True G91180
TU135249 lncRNA downstream 167102 6254603 ~ 6261915 (+) True akt3a
TU135252 lncRNA downstream 167102 6254603 ~ 6358016 (+) False akt3a
TU135248 lncRNA downstream 192058 6279559 ~ 6291443 (+) False akt3a
TU135268 lncRNA downstream 282709 6370210 ~ 6370528 (+) True G91324
TU135295 lncRNA downstream 365243 6452744 ~ 6453076 (+) True G91343
XM_043254562.1 mRNA upstream 92432 5982518 ~ 5985958 (+) True commd8
XM_043256152.1 mRNA upstream 125971 5951217 ~ 5952419 (+) False lamtor3
XM_043256229.1 mRNA upstream 131488 5936401 ~ 5946902 (+) True LOC122357047
XM_043254815.1 mRNA upstream 142806 5930197 ~ 5935584 (+) True lrit3b
XM_043256161.1 mRNA upstream 270514 5795240 ~ 5807876 (+) False nsd2
XM_043255888.1 mRNA downstream 1451 6088952 ~ 6101193 (+) True oga
XM_043255889.1 mRNA downstream 1451 6088952 ~ 6101193 (+) False oga
XM_043255892.1 mRNA downstream 14130 6101631 ~ 6103986 (+) True npm3
XM_043255890.1 mRNA downstream 16625 6104126 ~ 6107776 (+) True arl3a
XM_043255891.1 mRNA downstream 16625 6104126 ~ 6107776 (+) False arl3a
TU134595 other upstream 1080494 4992327 ~ 4997896 (+) False si:ch73-49p17.1
TU134239 other upstream 1834349 4182499 ~ 4244041 (+) False G90660
TU134245 other upstream 1834349 4182499 ~ 4244041 (+) False G90660
TU134242 other upstream 1834349 4241132 ~ 4244041 (+) True G90660
unassigned_transcript_1924 other upstream 2006491 4071806 ~ 4071899 (+) True trnai-uau_4
unassigned_transcript_1926 other downstream 1043925 7131426 ~ 7131496 (+) True trnag-gcc_68
TU135767 other downstream 1748689 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 1771197 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 2218985 8306486 ~ 8310824 (+) True G91833
XR_006252358.1 other downstream 2578767 8666268 ~ 8683052 (+) False pcnx2

Expression Profile