si:ch211-250c4.3 (LOC107699306,LOC107589555,LOC107727387,LOC107708411,LOC107678604,LOC100535981)


Basic Information

Item Value
gene id si:ch211-250c4.3
gene name LOC107699306,LOC107589555,LOC107727387,LOC107708411,LOC107678604,LOC100535981
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4643112 ~ 4669016 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255640.1
CACAAAGGCTTTCTCCGAAGTCTTTCCCCTCCCTCCAGCGATCCGTCACCCCTCCTCCAGCTGCTGATGGTCCTGCTGAAGGCAGTCAGCTCGTTCTCCTCAGTGTGAGGACagcagcctctctctctctctctcacacacgctccTGCACTATTCTGACCGTACGCTAAAAAACGGATATACACCTTTGTGGAGCATCTGAACTATCTGAGCACTTGATTCAGGAAAAATAAGATCATGAGGTGTGATTAAATAAGCCAACAAGGAGGGGTTCTTCCTCGTGACACTACTGAAAACTACTGAAGTTTCGGACGTCCACTATGAGTCTTAAGAGGAGGAAACCAAGCATGGTGTTCAGCTGGCACAAGTCTTTCACCATCCTCGCCCCGTGGAGAAAAGgtAAAGGGGATATTGTTTTAGATAATGACGTTGTACTGACAAAAATGAAGCTCCTCAACAACGTCCCTGAGAAACTGTTAAATGTTGAGGACTCCATTTCAACCATCTCCATTTCAATGTCCGAGCAGGATAACACAGAACCTCTCCAAGCAGATGAGGTGATCTCTGTCCACAGCGCTGCTCCTGAGACCACCGTCTCTGAATCAAAAACAGACTATCTATCTTCTATTTTTGCCGATTCTGAACTTCCAAGATTGTATAAATTTGAATCCGAGGACTCCGGGGTAGAAATGACTAGTGGAGCCACTTCTCCATCCACCCCAACTGGTTCAGAGCAAAGCTTTGTGGTCCACAGTAGGGAGTCTTCATGCGACTCTGGCAACCTGAACTCTCCTGTACCTGCTGACAATCCTCTTGAAGACAGCTCAGTCTTCTTAGAGACCGAAGAAACGTCTTGTAAGTGTGCTAAACAAGACACTTTTACCATCCTGGCAGACAGAACAGAGGATGAGAATGTTGATGATGATTTAATAGACATCACAGCAGATTCAGAGAGGTCCGAGGACAGAACCCTGAGGAATACCATGGAGAACTGTAAAGATGCCATTGAAATCATGGCAGCACAAGAGGAAATAACAGACACTGCAATGGCTGAGGACACAATGTCAAGGAGCCAGTGTTCTATAGAAGCTTATGATGGCAAAACAGGACCTGAATTTCAGCAGCGGCCTTTGAGGAAAAGTACAACCAGTGACAGTTTGGATGAGTACATGGAAGAGTGCTGCAGGCTAAGTGAGGTGAACCAAGCCAATCAGTCCAACCCACTGGGCTCTGGACTGGGGTACCTAGAGCACATCTGCCAGCTCATAGAGAAGATCGGACAGCTACAAGAACACAACCTTCGACTACAGAAACAGATCTGTGGCCTGCAGAAGGAAGGCCGAGTGATCAAGACTAAAGAGGACTTCTTCATGCAGCACTGTAGCTGTGGAGCAGCCAGCTTGGCCTTTCAGGAGCTCAAGAGGCAGTTTCGCAGTGACCACTACAGCCTGACGGCATCAAGCGGCACACTGTCTGACCTCAGCACAATCCCTGAGGTCACGCGCATCCCCCTCCGGGCAGCCACGAGAGATGGTGAGATGGGTGCTCTTCCTGTTTGGAGGAGGGGTCTGAATCGAAGGAGCTACACGGAGGGAGAGGCCAAGTACCTGAGCGACAGCGCTGAGGTCCTCTCCGCTCCTCACAGACGCTTGAGTGAGAACTATACATGGGGACGAGTGAAGGATCTGGTGAAGAAGACCAAACTGAGGAACCAGAGCCGCCTGGGACTGTCTTCAGGCTCCCTGAAGAGATCCTGTCCACAGCTTTACCGATGTGATGTCAGCAGAACGGCCCAGGACAAGCAGAAACTCCATGATTGCTTTGGGACATCAGAAAGTGGACTATCTGTGGTCACAGTAGCATTAATCAGACATTGAACAGATGGCCTGCGACGAGGCAGCTTTTCCAAAAAGCAAAGGACAAAGTGGTAGTTTTTGCCATTTGCAGATGGTTTTCCAGATTGAGGAACAAGACGGGAGAGAAATGCACAAAGTAAACAATGAATGGGATTGGAATAATGCTAGAAAAAAATTGGTATCACGTGTATACGTAATACTAAGAGAGATGCTTATATGTTGAGGAAAGTGTTAAGTTGACCTGTTGATGGAACTTGTTTGTGTGACGTGACATTTCTGTAAATGTCATTAATTCAGATGAAGCACTCATTAGATCTGTCAGCTAATGAGGTACTATTAAAGACGATAGAAGCGTGGAAATGAGTTAGAGAATGTGAACAGACAAAGGGAATTACAGTAAATACTTATGTATAGTCTAACGTACATTTCTGCCAAGACAGTTTACCAGATGCTGTCCTAATTGTAAAATACTTGAAACGCATCCAAATGACAACAAATGTTGAACATGCATGCTATATCTTTATATAGATCATTTTGTACCACTATTATAACTGCcgtgtgtaagtgtgtatatatacagatgTAACAAATATGCACGTATGTATCCATGATGCATGGATCATATGTGAAGATGAGGGTGGATAAGAAGCGCTCCCACGTCTGAATTCCTCTATCTACAGACATATATCGCTGTGATGACGGGGCTCATGATAACATGTAAATGACTTATGGCAGTTCTGTGTACAGCTCGCCTGTCCGATGTTATATAATGTGTGGCCCGTCTAAAAGTTAAGCAAGCCCAGAGTGAAATATCCAAAATATCACCCTTAAATATGAATTGAACCAGGCCTCCTGCCAAATATTAGTCCAAAGACATGAACACagaatcatttatattataaacgTACCTCAGGGAGAAAGCGTAAATAAAAGAACTGTATGAATTGACCTCTTTAAATTGATAAGGTGCTTAATTCAGGCTGTCACTAATAAAACACTACAGTTAATCCACAGCGTAAACAGACAGATATCAGTCAGCATTAAGTTAAGCTCTGAAAGTCAAGTTTAACCGTCTTTGCTGACAGCTGTGTGAGTGAGGTACTAAAATACTGATGTCTAGATAAAGGCTGTTTTGCAGAACGCTTGCGGTCTTTCCGTGTAAAAGAAGGAACATCAGTTTTTAACACAATATCGTTCTGGCCAGGAAAGTGTATTGAAACACGGCTTCCAGCGAATGTCTTTCAATGTACGCATGACTTATTTCATAGTCACCggtgttaaaaataaacgaGCGCTGAAGTAcggtaattttcttttttgtctatTAGGGACAGAAGACAAGACCATGAGATTTTGTACTTATCTTGTTTTGCAATGTACCAAATGGACGGAACAATTCGATATGCATATTGCATTgctattcaaatgtattttttaataaatatgatatttctAAATAACA
>XM_043255641.1
TCTCCGAAGTCTTTCCCCTCCCTCCAGCGATCCGTCACCCCTCCTCCAGCTGCTGATGGTCCTGCTGAAGGCAGTCAGCTCGTTCTCCTCAGTGTGAGGACagcagcctctctctctctctctcacacacgctccTGCACTATTCTGACCGTACGCTAAAAAACGGATATACACCTTTGTGGAGCATCTGAACTATCTGAGCACTTGATTCAGGAAAAATAAGATCATGAGGTGTGATTAAATAAGCCAACAAGGAGGGGTTCTTCCTCGTGACACTACTGAAAACTACTGAAGTTTCGGACGTCCACTATGAGTCTTAAGAGGAGGAAACCAAGCATGGTGTTCAGCTGGCACAAGTCTTTCACCATCCTCGCCCCGTGGAGAAAAGgtAAAGGGGATATTGTTTTAGATAATGACGTTGTACTGACAAAAATGAAGCTCCTCAACAACGTCCCTGAGAAACTGTTAAATGTTGAGGACTCCATTTCAACCATCTCCATTTCAATGTCCGAGCAGGATAACACAGAACCTCTCCAAGCAGATGAGGTGATCTCTGTCCACAGCGCTGCTCCTGAGACCACCGTCTCTGAATCAAAAACAGACTATCTATCTTCTATTTTTGCCGATTCTGAACTTCCAAGATTGTATAAATTTGAATCCGAGGACTCCGGGGTAGAAATGACTAGTGGAGCCACTTCTCCATCCACCCCAACTGGTTCAGAGCAAAGCTTTGTGGTCCACAGTAGGGAGTCTTCATGCGACTCTGGCAACCTGAACTCTCCTGTACCTGCTGACAATCCTCTTGAAGACAGCTCAGTCTTCTTAGAGACCGAAGAAACGTCTTGTAAGTGTGCTAAACAAGACACTTTTACCATCCTGGCAGACAGAACAGAGGATGAGAATGTTGATGATGATTTAATAGACATCACAGCAGATTCAGAGAGGTCCGAGGACAGAACCCTGAGGAATACCATGGAGAACTGTAAAGATGCCATTGAAATCATGGCAGCACAAGAGGAAATAACAGACACTGCAATGGCTGAGGACACAATGTCAAGGAGCCAGTGTTCTATAGAAGCTTATGATGGCAAAACAGGACCTGAATTTCAGCAGCGGCCTTTGAGGAAAAGTACAACCAGTGACAGTTTGGATGAGTACATGGAAGAGTGCTGCAGGCTAAGTGAGGTGAACCAAGCCAATCAGTCCAACCCACTGGGCTCTGGACTGGGGTACCTAGAGCACATCTGCCAGCTCATAGAGAAGATCGGACAGCTACAAGAACACAACCTTCGACTACAGAAACAGATCTGTGGCCTGCAGAAGGAAGGCCGAGTGATCAAGACTAAAGAGGACTTCTTCATGCAGCACTGTAGCTGTGGAGCAGCCAGCTTGGCCTTTCAGGAGCTCAAGAGGCAGTTTCGCAGTGACCACTACAGCCTGACGGCATCAAGCGGCACACTGTCTGACCTCAGCACAATCCCTGAGGTCACGCGCATCCCCCTCCGGGCAGCCACGAGAGATGGTGAGATGGGTGCTCTTCCTGTTTGGAGGAGGGGTCTGAATCGAAGGAGCTACACGGAGGGAGAGGCCAAGTACCTGAGCGACAGCGCTGAGGTCCTCTCCGCTCCTCACAGACGCTTGAGTGAGAACTATACATGGGGACGAGTGAAGGATCTGGTGAAGAAGACCAAACTGAGGAACCAGAGCCGCCTGGGACTGTCTTCAGGCTCCCTGAAGAGATCCTGTCCACAGCTTTACCGCCCAGATGTGATGTCAGCAGAACGGCCCAGGACAAGCAGAAACTCCATGATTGCTTTGGGACATCAGAAAGTGGACTATCTGTGGTCACAGTAGCATTAATCAGACATTGAACAGATGGCCTGCGACGAGGCAGCTTTTCCAAAAAGCAAAGGACAAAGTGGTAGTTTTTGCCATTTGCAGATGGTTTTCCAGATTGAGGAACAAGACGGGAGAGAAATGCACAAAGTAAACAATGAATGGGATTGGAATAATGCTAGAAAAAAATTGGTATCACGTGTATACGTAATACTAAGAGAGATGCTTATATGTTGAGGAAAGTGTTAAGTTGACCTGTTGATGGAACTTGTTTGTGTGACGTGACATTTCTGTAAATGTCATTAATTCAGATGAAGCACTCATTAGATCTGTCAGCTAATGAGGTACTATTAAAGACGATAGAAGCGTGGAAATGAGTTAGAGAATGTGAACAGACAAAGGGAATTACAGTAAATACTTATGTATAGTCTAACGTACATTTCTGCCAAGACAGTTTACCAGATGCTGTCCTAATTGTAAAATACTTGAAACGCATCCAAATGACAACAAATGTTGAACATGCATGCTATATCTTTATATAGATCATTTTGTACCACTATTATAACTGCcgtgtgtaagtgtgtatatatacagatgTAACAAATATGCACGTATGTATCCATGATGCATGGATCATATGTGAAGATGAGGGTGGATAAGAAGCGCTCCCACGTCTGAATTCCTCTATCTACAGACATATATCGCTGTGATGACGGGGCTCATGATAACATGTAAATGACTTATGGCAGTTCTGTGTACAGCTCGCCTGTCCGATGTTATATAATGTGTGGCCCGTCTAAAAGTTAAGCAAGCCCAGAGTGAAATATCCAAAATATCACCCTTAAATATGAATTGAACCAGGCCTCCTGCCAAATATTAGTCCAAAGACATGAACACagaatcatttatattataaacgTACCTCAGGGAGAAAGCGTAAATAAAAGAACTGTATGAATTGACCTCTTTAAATTGATAAGGTGCTTAATTCAGGCTGTCACTAATAAAACACTACAGTTAATCCACAGCGTAAACAGACAGATATCAGTCAGCATTAAGTTAAGCTCTGAAAGTCAAGTTTAACCGTCTTTGCTGACAGCTGTGTGAGTGAGGTACTAAAATACTGATGTCTAGATAAAGGCTGTTTTGCAGAACGCTTGCGGTCTTTCCGTGTAAAAGAAGGAACATCAGTTTTTAACACAATATCGTTCTGGCCAGGAAAGTGTATTGAAACACGGCTTCCAGCGAATGTCTTTCAATGTACGCATGACTTATTTCATAGTCACCggtgttaaaaataaacgaGCGCTGAAGTAcggtaattttcttttttgtctatTAGGGACAGAAGACAAGACCATGAGATTTTGTACTTATCTTGTTTTGCAATGTACCAAATGGACGGAACAATTCGATATGCATATTGCATTgctattcaaatgtattttttaataaatatgatatttctAAATAACA

Function

NR:

description
PREDICTED: uncharacterized protein LOC108263685

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255640.1 True 3318 mRNA 0.44 8 4643112 4669016
XM_043255641.1 False 3312 mRNA 0.44 8 4643123 4669016

Neighbor

gene id symbol gene type direction distance location
atl2 atl2,LOC107586488,LOC107699303,LOC107589558,LOC107708410,LOC107727384,LOC107678587 coding upstream 20313 4612642 ~ 4622799 (+)
dhx57 dhx57,LOC107727356,LOC107708406,LOC107678533,LOC107699277 coding upstream 36023 4595648 ~ 4607089 (+)
epas1b LOC107727363,LOC107586486,LOC107699276,LOC107708405 coding upstream 59613 4549100 ~ 4583499 (+)
prkceb prkceb,LOC107727364,LOC107699301,LOC107708403,LOC108422423,LOC108263296 coding upstream 95603 4474420 ~ 4547509 (+)
mcfd2 mcfd2,LOC107727380,LOC107699287 coding upstream 202042 4438451 ~ 4441070 (+)
LOC122356972 h2afy2,LOC107699309,LOC107589552,LOC107708416,LOC105010730 coding downstream 160721 4829737 ~ 4836732 (+)
pitx3 pitx3,LOC107699310,LOC107678606,LOC107582478,LOC107708419,LOC107589551 coding downstream 236550 4905566 ~ 4917155 (+)
gins1 gins1,LOC107708421,LOC107727378 coding downstream 260182 4929198 ~ 4931710 (+)
aifm2 aifm2,LOC107699314,LOC107708424,LOC107678552 coding downstream 288633 4957649 ~ 4962720 (+)
LOC122356724 LOC107699313,LOC107582481,LOC107727371,LOC107678550 coding downstream 299157 4968173 ~ 4988224 (+)
G90700 NA non-coding upstream 171368 4471065 ~ 4471744 (+)
G90659 socs5b,socs5,LOC107727375,LOC107586485,LOC107699300,LOC107708402 non-coding upstream 177244 4459639 ~ 4465868 (+)
LOC122357002 NA non-coding upstream 397322 4244608 ~ 4245790 (+)
LOC122356176 NA non-coding upstream 500610 4137317 ~ 4142502 (+)
G90650 NA non-coding upstream 537641 4105247 ~ 4105471 (+)
G90888 NA non-coding downstream 295686 4964702 ~ 4965015 (+)
G90879 LOC107733683,LOC107690158,LOC107582524,LOC107678493,LOC107708465 non-coding downstream 334394 5003410 ~ 5013662 (+)
G90905 NA non-coding downstream 366343 5035359 ~ 5036116 (+)
G90957 NA non-coding downstream 728479 5397495 ~ 5435571 (+)
G90985 NA non-coding downstream 832626 5501642 ~ 5505510 (+)
G90660 epcam,LOC107699293,LOC107727368,LOC107586477,LOC107707148,LOC107678540,LOC107707150,LOC108422531,LOC107723711 other upstream 289181 4182499 ~ 4353931 (+)
pkdcca pkdcca,LOC107669579,LOC107739483,LOC107718010,LOC107695038,LOC107590011,LOC107586469 other upstream 810562 3809053 ~ 3832550 (+)
prkn park2,LOC107739476,LOC107669573,LOC107696378 other upstream 929349 3620406 ~ 3713763 (+)
G90377 NA other upstream 1193095 3449401 ~ 3450017 (+)
G90348 dnph1 other upstream 1362115 3277837 ~ 3280997 (+)
si:ch73-49p17.1 LOC107678601,LOC107727381,LOC107589548,LOC107708422 other downstream 323137 4992153 ~ 4997991 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other downstream 508702 5177718 ~ 5198404 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other downstream 592020 5261036 ~ 5271247 (+)
lamtor3 lamtor3 other downstream 1282201 5951217 ~ 5952517 (+)
commd8 commd8,LOC107666485,LOC107556927,LOC107733703,LOC107585230 other downstream 1313502 5982518 ~ 5986979 (+)

Expression


Co-expression Network