XLOC_005691 (wdr92)


Basic Information

Item Value
gene id XLOC_005691
gene name wdr92
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 1131748 ~ 1141171 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011295
ATTGAAACAAAGAAGAAGCAAACAGCGCAACTGACATCTCTTTCCTTCTGCTCAAACTGATAGATTTTAGTTTCATATTGAGCACAGATCATGTCAGCAGCTCTCGAGAAGCCGCAGATCATCGCGCACATCCAGAAGAGCTTGAACTACACGGTGTTCGAGAGCAAATGGATTCCGTGCAGCGCCAAGTTTGTTTGTATGGGAAACTTCGCGAGAGGAACCGGAGTGATGCAGATCTACGAGATCCAGCACGGGGAGCTGCAGCTGGTCAGAGAGATAGAAAAATCCAAGCCAATCAAGTGTGGGACGTTTGGAGCCACGTCTCTCCAGCAGAGGCATCTGGCCACCGGAGACTTTGACGGAAATCTTAACGTTTGGAATCTGGAAGTGCCCGACAGCCCGGTGTACTCAGTTAAAGCACACAAGGAGATCATAAACGCCATTGACGGAGTGGGAGGACTGGGCATCGGGGACGGGGCTCCAGAGATCGTCACTGGAAGTAGAGACGGCACAGTGAAGGTGTGGGACTCCCGGCAGAAAGACACGCCGGTGGTCAACATGGAGCCCACAGAGGGAGAAACCAAGAGGGACTGCTGGACGGTCGCTTTCGGTCATGCTTTCAATGATCAAGACCGCTGTGTGTGCGCTGGATATGATAACGGCGACATCAAGCTGTTCGATCTTAGAAACATGTCTTTACGATGGGAGAAGAACATCAGAAATGGGGTGTGCTCTGTTGAATTCGACAGAAAAGACATCAACATGAACAAACTAGTGGCCACATCTTTAGAAGGCAAGTTTCACGTGTTCGACATGAGGACGCAGCACCCCAGCAAAGGCTTCGCTTCAGTCTCCGAGAAGGCTCACAAATCCACAATATGGCAAGTGAGGCACTTACCTCAAAATCGTGACGTCTTCATGACAGCCGGAGGAGCGGGAAACCTGCATTTATGGAAATATGAGTATCCGGCCCAGAGGAGTAAGAAGGGAGCAGATGATGTGGAGATGGGGGTCGCTGGATCTGTCAATCTCCTCCAGAACGTGACTCTGTCCACACAACCCATCTCCAGTCTAGACTGGAGCCCGGATAAACAGGGTCTCTGCGTCTGCTCCTCATTCGACCAGTCTGTACGAGTGCTCATAGTCACCAAACTCAACACTGTCTGAGCCAACAGTACATCACTTTTATTCTCCAACAGACTGGAATATCTGATGACTGTTTACATGAACGTGtgtgtcttaaagggacagttcaccccaaaatataatgtactcactatttattcttCCTTGTgtggttttcaaacttttattatcttttatcggaaacaaaagaagatatttccattaatgttggaaacctgtaaccattgacttccatagtaggaataacaagtactatggaagtcaatgtttttcagaatatcttcccttgtgtttaataagttaataagctcaaaggtttgaaacaaggatgacaattttaattttggggtgaactatcccttaagtaAATCTGCAATTGTATTCGAGTTGATTAGTTTTTTTACAGACAAGTGTTATGATGCTTTATAACACTGGATGTAGTTGTGACTTTGCTTTGCTAGCACTGGTGAAATGGGTTCTTATGCCCAAAGTGAAGGCCTTCAGTGCTATGGTGAAGTTATTATTGatctttaataataaaatcaaaacatgaatTTCTATTA
>TCONS_00011296
CAGGGATCAGTTAAAAATAGAGATTTATTCAtgatctattatgcaaaaatcccttttataaggggtttaaccccagttgtgtgtcagcagtttgtgaatatctccagcctctaatgATAGAAAAATCCAAGCCAATCAAGTGTGGGACGTTTGGAGCCACGTCTCTCCAGCAGAGGCATCTGGCCACCGGAGACTTTGACGGAAATCTTAACGTTTGGAATCTGGAAGTGCCCGACAGCCCGGTGTACTCAGTTAAAGCACACAAGGAGATCATAAACGCCATTGACGGAGTGGGAGGACTGGGCATCGGGGACGGGGCTCCAGAGATCGTCACTGGAAGTAGAGACGGCACAGTGAAGGTGTGGGACTCCCGGCAGAAAGACACGCCGGTGGTCAACATGGAGCCCACAGAGGGAGAAACCAAGAGGGACTGCTGGACGGTCGCTTTCGGTCATGCTTTCAATGATCAAGACCGCTGTGTGTGCGCTGGATATGATAACGGCGACATCAAGCTGTTCGATCTTAGAAACATGTCTTTACGATGGGAGAAGA

Function

symbol description
wdr92 Predicted to enable ubiquitin binding activity. Predicted to act upstream of or within apoptotic process. Predicted to be located in cytoplasm. Orthologous to human DNAAF10 (dynein axonemal assembly factor 10).

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0005575 cellular_component cellular_component
GO:0043130 ubiquitin binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-050417-93 Predicted to enable ubiquitin binding activity. Predicted to act upstream of or within apoptotic process. Orthologous to human DNAAF10 (dynein axonemal assembly factor 10).

Ensembl:

ensembl_id ENSDARG00000037334

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011295 False 1709 mRNA 0.45 8 1131748 1141171
TCONS_00011296 True 552 mRNA 0.50 5 1132261 1138002

Neighbor

gene id symbol gene type direction distance location
XLOC_005690 ppp3r1a coding upstream 10975 1100197 ~ 1120773 (+)
XLOC_005689 cnrip1b coding upstream 34731 1089942 ~ 1097017 (+)
XLOC_005688 prokr1b coding upstream 106524 1015749 ~ 1025224 (+)
XLOC_005687 NA coding upstream 145485 973009 ~ 986263 (+)
XLOC_005686 pcsk2 coding upstream 154096 912123 ~ 977652 (+)
XLOC_005692 perp coding downstream 14365 1155536 ~ 1170695 (+)
XLOC_005693 tnfaip3 coding downstream 41086 1182257 ~ 1208930 (+)
XLOC_005694 ifngr1l coding downstream 216381 1357552 ~ 1374927 (+)
XLOC_005695 rab23 coding downstream 240782 1381953 ~ 1395002 (+)
XLOC_005696 si:ch211-165e15.1 coding downstream 288923 1430094 ~ 1534879 (+)
XLOC_005685 NA non-coding upstream 269852 859057 ~ 861896 (+)
XLOC_005671 NA non-coding upstream 427410 471548 ~ 704338 (+)
XLOC_005675 NA non-coding upstream 570763 553591 ~ 560985 (+)
XLOC_005670 CABZ01061569.1 non-coding upstream 693286 438347 ~ 438462 (+)
XLOC_005701 CABZ01044297.1 non-coding downstream 624336 1765507 ~ 1765622 (+)
XLOC_005705 NA non-coding downstream 842140 1983311 ~ 2033043 (+)
XLOC_005706 NA non-coding downstream 1008599 2149770 ~ 2153016 (+)
XLOC_005708 CR376766.2 non-coding downstream 1211118 2352289 ~ 2352995 (+)
XLOC_005710 CR376766.1 non-coding downstream 1245242 2386413 ~ 2386533 (+)

Expression


Co-expression Network