RNA id: TCONS_00011297


Basic Information

Item Value
RNA id TCONS_00011297
length 3265
RNA type mRNA
GC content 0.37
exon number 3
gene id XLOC_005692
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 1155536 ~ 1170695 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTAACACTCGACCAGAACACACGCTTTACACTCTATCAGAAGCATAATGTTCCGGTGTGGGATCGACTACACGCGGTGTCGGTGGATCTTGCCGATGCTGCTGCTGTTCGCCATTATATTCGACATTATCGCGATCGCGGCGCAGTCCGGCTGGGTGGAGGATCAGGACGCTAAAACACACTACGCCAGCATGTGGAAGCAGTGCCGAGGCCGCAACGACCAGTGGGACTGCAAATCCCTCATGGAGTTCTCTTGGGCTCAGGCTGTAGCTGCTCTGATGATCATCGGcctcatcatcctcatcttcgCCTTCATCATCTCATTAGTGGCACTGTGCTCTACCGTCAACGTCTCTCTGCTGCCCTTCATCGGACTACTCCTCATCCTGGCTGtAATCGTGCAGATCATCGCTCTGATCATCTACCCGGTCAAGTTTAACGAGCAGATCTACGAGGGTTATTACGACTACACGTGGGCTTACGGTTTCGGCTGGGGCGCCACAATCCTGACGCTGGGCTGCGCGATCCTCTTCTGCTGCCTGCCCCGCTACGAGAGCGAGATCACCGGCCTTGAAAAGACCAAATACATCTACCAGTCTGGCtaagagaaaaacacacacaacacacctgAGAAAGGACAGTCTCACACACCACTCCAGCATGAGGAACACTGAGAGAGCACCAGCATtaactaaaaacacacacaaaacggCGTCTGTGCTGAGAAAATGGCCTTTTTGACTCACTTTTGCTGCAGTTATGCttcattttaagtcattttattgtttttcatgtttttttttcatttaaagggaTTGCACACCCCAaatctttgggtgaactgtccctttaacaggtATACATGCATCTCTCCCATAGTTAATTCTGATAtgtggaaatatatgcaaataactTCTATAATATACAAGAAAATAGGCCTTTTTGACTCACTTTTGGCGCAATAATGCTTAATTTTAATCCGTTTTAatcctttttattatttgttcatgcACGTAAACtggacatttaaagggatagcgcACCCAAAAGTGAAACTAAATTCactatttattctccctcatgtgttttcatgagtttctttcctctgttgaatgcaaaggaagatatttagaaaaaatgtGGAGAAAAGCAACCATTGGCTATTATAATAGGACAAAAAAATGttactgttgaagtcaatggGTGCATTTCTGAGGtaacattttagggtgaactgtccctttaacaggtATACATGCCTCTCTCCCATTGAGAAATCTGAAAGGTGGAAAAATATGCAGATTACATGTATAATATGCAAGAAAACGGGCCAATTTGACTCACTTTTGGGGCAATTATGGTTCATTTTAgtcagtgtttatttttattcattcgcAAAGTGTGTCATTTAAAGGGATATCGCACCCAAAATGAAACTAaattcatcatttattctccctcatgtgagtgtcttttttctgttgaacacaaaagaagatatttagaaaaatggtgGAGAAaagcaaccattgacttctatagtaggacaAAAAGGTACCATGGGAGTCAATGGGTGCATTTTAGGTGagatttttggggtgaactgtccctttaacaggtATACATTCATCTCTCCCATAGAGAAATCTGATAGGTGGAAATATATGCACATTACATCTTTGACATACAAGTACATGGGTCCTTTTGACTCACATTTGGGGCAATTATGcttcattttctgtcagttttttattatttttttattaatattcattcacaGAGTGTGTCATTTAAAGAGATAgcgcacccaaaaataaaactaaattcatcatttattctccctcatgtgaaTGTCTTTCGTCTTTTGAATgcaaaggaagatatttagaaaaatgggggagaaaagcagccattgacttttatagtaacacatggaagtcagtgggtgcATTTGTAGGTGAGATTTTTGGCGTGAACTGTCCCTCTAACAGGTATACATGCATCTCTCCCATAGTTAATTCTGATAGGTGGAAATATATGCACATTACATGTGTGATATGCAACACAAATGGCATTTTGTCTCACTTTTGGGGCAATTGAGGTTCATtttagtctgtttttatttcatttattcgcAAAGTgtgtcatttaaagggatagcacACCCAAAGTGAAACTACATTCaacatttattctccctcatgtgagtctctttcttctgttgaacacaaaagaagatatttagaaaaatggtgGAGAAAAGCAGCCACTGACATAAATAGTAGGAcaaaaatactattgaagtcactGAGTGCATTTTGGAGTAAACGATGGaacatttttgcgtgaactgtccctttaacaggtGTACATTCATCTCTTCCATATTGAAATATGATACGTGTTAATATATGCAAATTGATTATATCTCATATtcaaattttatatattaatttcataTATAAAACATGTATAGTCATATATGAACACACATTATGGCTAACATATACAtgcatattatttataatatatatttacaattcaAATGGTTTAAAtggtttatataaataataaaattatttttaaaaaagtcatttttgtattattttaaaatatatgttgcatatatactTGTACGTCATATATGTAATTAGCATATATTACCATATATCAAGATTTCTGTGTGTGTTATGTATTTTCTTTAGCTGTTTGTGGCATATGACTTGTAAAAATTAATTTAGGAAGTACAGTAATCGCATTATTATGTAGTTTCTGGATGCATGAATTGACGCTGTAACCTGCTGTGTGAAGTGCGACTGAGAGTTTTGTTGTTTGTATATTTTCTTGAACTTCTCTTCATATTAACATTGAGATTTTTGACGATGTAACTGTGCTTTATATTAATTGATGCATCATTCCATGTGCTGGacgtcattgttgttgtttagaCATGCAGATTTATTGCACATTTCCCTAAAGTTATCTCACTGTTGGAGCAGAATGTGTATATTTGAGTTTTTTGTCAGTAAATAAGGAGTTTTAACCTTGAGGTGcttaaaaacactaaataaatgaCTGTCATCCTGACAGTACGCTTTTCTtagacaaataaatgtaaaacaatttaatacCAATTTAAAGAAGTCTATTTTAGCTGTAAACTTTGTAGGTTTTTGAAGCTTTTTTCTAGAGTTTTCACTGTTTTGTGGTTCTCTGTGATCTGAATTGTAAACCATTCTTTAATAAAAGGGAGTTTTGCAATGAAA

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0098609 cell-cell adhesion biological_process
GO:0009411 response to UV biological_process
GO:1902262 apoptotic process involved in blood vessel morphogenesis biological_process
GO:0005911 cell-cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04115 p53 signaling pathway

ZFIN:

id description
ZDB-GENE-050104-1 Acts upstream of or within apoptotic process involved in blood vessel morphogenesis; regulation of apoptotic process; and response to UV. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell-cell junction. Is expressed in several structures, including EVL; axial chorda mesoderm; digestive system; epidermis; and nervous system. Human ortholog(s) of this gene implicated in erythrokeratodermia variabilis and mutilating palmoplantar keratoderma with periorificial keratotic plaques. Orthologous to human PERP (p53 apoptosis effector related to PMP22).

Ensembl:

ensembl_id ENSDART00000148356

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013534 lncRNA upstream 169273 973009 ~ 986263 (+) True XLOC_005687
TCONS_00013530 lncRNA upstream 293640 859192 ~ 861896 (+) False XLOC_005685
TCONS_00013535 lncRNA downstream 812616 1983311 ~ 2029457 (+) False XLOC_005705
TCONS_00013536 lncRNA downstream 812616 1983311 ~ 2033043 (+) False XLOC_005705
TCONS_00013537 lncRNA downstream 815651 1986346 ~ 1999261 (+) False XLOC_005705
TCONS_00011315 lncRNA downstream 839592 2010287 ~ 2029457 (+) True XLOC_005705
TCONS_00013539 lncRNA downstream 979075 2149770 ~ 2153016 (+) False XLOC_005706
TCONS_00011295 mRNA upstream 14365 1131748 ~ 1141171 (+) False XLOC_005691
TCONS_00011296 mRNA upstream 17534 1132261 ~ 1138002 (+) True XLOC_005691
TCONS_00011294 mRNA upstream 34763 1100197 ~ 1120773 (+) True XLOC_005690
TCONS_00011293 mRNA upstream 58519 1089942 ~ 1097017 (+) True XLOC_005689
TCONS_00011292 mRNA upstream 130312 1015749 ~ 1025224 (+) True XLOC_005688
TCONS_00011299 mRNA downstream 11562 1182257 ~ 1208930 (+) False XLOC_005693
TCONS_00011298 mRNA downstream 11562 1182257 ~ 1208930 (+) False XLOC_005693
TCONS_00011300 mRNA downstream 11577 1182272 ~ 1208930 (+) True XLOC_005693
TCONS_00011301 mRNA downstream 186857 1357552 ~ 1374927 (+) False XLOC_005694
TCONS_00011302 mRNA downstream 198308 1369003 ~ 1374390 (+) True XLOC_005694
TCONS_00011289 other upstream 306110 844143 ~ 849426 (+) False XLOC_005684
TCONS_00011277 other upstream 644397 502319 ~ 511139 (+) True XLOC_005673
TCONS_00011274 other upstream 717074 438347 ~ 438462 (+) True XLOC_005670
TCONS_00011310 other downstream 594812 1765507 ~ 1765622 (+) True XLOC_005701
TCONS_00011320 other downstream 1215718 2386413 ~ 2386533 (+) True XLOC_005710
TCONS_00011338 other downstream 1662397 2833092 ~ 2833207 (+) True XLOC_005718
TCONS_00011360 other downstream 2792072 3962767 ~ 3966255 (+) True XLOC_005731
TCONS_00011389 other downstream 4815081 5985776 ~ 6001981 (+) True XLOC_005757

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU43855 False 1967 lncRNA 0.38 3 CI01000005 4846925 ~ 4856307 (-)
mexican tetra (Astyanax mexicanus) TU43855 True 425 lncRNA 0.42 1 NC_035899.1 72652355 ~ 72652779 (-)