RNA id: CI01000005_07018058_07025374.mRNA


Basic Information

Item Value
RNA id CI01000005_07018058_07025374.mRNA
length 2759
RNA type mRNA
GC content 0.41
exon number 7
gene id CI01000005_07018058_07025374
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 7016841 ~ 7025374 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCTTTCAGGCGGACTGTGTTCTTCTGCCTGTTGTGTTTGTTGATGCTCGTGCACGGCAGCAGGAGGAGACAAGCGCGCTGTCCCACATCATGTACATGCAGTAAAGATAACGCCTTATGTGCCAATACCGGATCAATACCGAGGGGCTTCCCACCAGATGTCATCTCACTATCGTTCGTCAAGTCTGGCTTTACTGAAATCCCTAAAGAGAGTTTCATTCACACACCAGCCCTCCATCTGCTTCTTTTCACAGCAAACGTCTTTGATTCTATAAATGAAGATGTGTTTCTTGGTCTTCCTCATCTGGAGTATCTGTTCATTGAAAATAACCAAATCAAGTCCATATCGCCTTACGCCTTCAGAGGACTCAAGTCCTTAATACACTTGGATCTGAGAGGAAATCTTTTCAGCTGCGACTGTAAGTTAAAGTGGTTAGTCGACTGGATGTTTCATACAAATGCAACTGTGGATGAGATCTACTGCAATGGCCCAGAAGCTTACCAGGGCAAAAAGATCAATGACCTTGAGGCGCAGTCATTTGATTGCATAACAACAGATTTTCCGCTGTTGAAGTCTCTTGAATTTCAGTCCATTTCAGTCGAAGCTTTTGCATTTGGTGGTGACCAGTTTGTCGTATTCGCCCAGCCGTTCACTGGCAGGTGTAACTTCATGGAATGGGATCACGTGCAAATGGAGTTCCGAAACTTCGATAACATCACAAGTACGTCGTCGGTCATCTGTAAACCTCTAGTCATTGACAGTCAGCTCTTCATTATAGTGGCACAACTGTTCGGCGGCTCGCACATCTTCAAGAGAGACGTCTCGGCAAACAAATTCATCAAAATCCAAGACATCGACATTTTGAAAATACGAAAGCCAAATGACGTGGAAATCTTCCATGTGGACGGAGAGTCTTTCTTCATCATTGCCGACAGCTCCAAAGCTGGCTCCACGACTATTTATAAATGGAACGGCAATGGCTTCTACTCCCATCAGTCCTTGCACCCCTGGCACCGCGACACAGACGTGGAGTATCTAGACATTTCTGGCAAGCCTCATTTGATTTTGTCCAGCAGCTCTCAACGGCCGGTCATTTACCAATGGAGCAAGAGCACCAAGCAGTTTGAGCGGCGTACGGATATCCCAGAGATGGAGGACGTGTACGCGGTCAAACACTTCACTGTGAAGAGCGAGCTCTACATATGTCTGACCCGCTTCATTGGCGACTCCAAGGTGATGAAATGGGACGGCAGCATGTTCAGTGAGATCCAGACCATGGCCTCCCGTGGCTCCATGGTCTTCCAGCCGTTCTCCATCGCCAACTGGCAGTACGCCATCCTGGGCAGCGATTACGCCTTTACTCGGGTCTATCGCTGGGACGCAAAGAAGAGACAGTTTATTCACTTCCAGGAGCTGAACATTCAAGCACCCAGGGCTTTTTCTCTGGTGTTCATTGACAACAGGGAGTTTCTTCTTGGCTCTAGTTTTAAGGGGCAAACACGGATATATGAACACCTGGTCCTTGACTTGAGCAGCTGATTTGCTCCATCGGGACAGTTGAGAATAATCAAAGAATCTCACAAAACACGTCCAGGTCATATTTAACTCTAAAATCTAAAAAAAAAAGACATTTTTTTTTTTGTTGTTTAAAGTAAATAAAGCCCGTTTTAAAGTCACCATGAAATCAAAATTGACAATTCTTTTTTTTTATGGAATATTGCAGTATTTATTATTAATGACTTACTTTATTTCATTCATGTTCCTGGTAATCTTGAATCAGAATATCTTCTCCTCCCTCTTGCAGTATCTCTTCTCTTCTCTGATGACGAGGGCGGGGCAACCTGTCACTCACATGAGATCCACCAATAGCAAACCACAACCATCCAATCAATTCACCACGGACTAAATCAAGCCCCGCCCTACATTTGTTCTTGTTCCTGAAGCTGTTTCTCTCAGATATATGGCACAATAGGGAATGCCAACTTTAAGCTTTTTTGCCATGTATTATTATTTTTATGATTTAAGCAATTTAAACCTCTCAATTCTCCATAATGTAATGTAGTTTTTTTTTTTACTGTAATACAGTAATCGACATAAAAATGTCACCATGCATAAAAATCTTAATGGTTCAAAAATAGGCTTCATTTTCTTTATTTCTTATTTTGTCTAACTTTTGATTTTGGGATGAAATATGACCTGGATGTGTTCAGATTCACAGCATGAAGACTCTTTGCAGATGACTTGCATGATGGTGCCTTAATTAGGTACCGCCGCTGAAATTATTCATGTTGTTTTGTTTTTTTTAATGATCTTCTCAGTGCATTTCTCATTCATTTCTGTTGTATTTTTACATTGTGACTGATGTACTTTCATTGAAATACTTGCTATTCTATTTATTAATGTGTTTATCTCAAATGAATCTTGTTTACTTCTCTCTTAACTTGTAAACAATGTATTTTATGTGGCAGCTGGGTGACATATTTGATACGCAGATTGGGAATTTGAAATATACATCGACTTTTGGAGTAGTGTGTCGTGTGAACATTGTTTTTTAGCATTTGCCTGTTTGTTCGAACTGTATTAACTACTAACAGACAACCAATGTCAGTACTTTTTTCAACAAGATACAATTATTTGTTATGAGATGAAGAGATTCTATATCACCAAAAGATGAAACTGTGATGTTCTACTGGATAAGTTTGTGCATGCAGTTTCATGCCTACATTTTGGAGACACTGATACTAACTTTAAATAAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45820 lncRNA downstream 16969 6999253 ~ 6999872 (-) True G40408
TU45818 lncRNA downstream 18498 6997582 ~ 6998343 (-) False G40407
TU45819 lncRNA downstream 18498 6997621 ~ 6998343 (-) True G40407
TU45775 lncRNA downstream 71269 6943111 ~ 6945572 (-) True G40382
TU45771 lncRNA downstream 77547 6939091 ~ 6939294 (-) True G40379
TU45804 lncRNA upstream 35213 7060587 ~ 7065300 (-) True G40402
TU45891 lncRNA upstream 129987 7155361 ~ 7155615 (-) True G40472
TU45930 lncRNA upstream 194637 7220011 ~ 7220359 (-) True G40497
TU45932 lncRNA upstream 197233 7222607 ~ 7222893 (-) True G40499
TU45936 lncRNA upstream 206232 7231606 ~ 7231852 (-) True G40503
CI01000005_06815976_06894322.mRNA mRNA downstream 122256 6815378 ~ 6894585 (-) True CI01000005_06815976_06894322
CI01000005_06772433_06793278.mRNA mRNA downstream 223563 6772433 ~ 6793278 (-) True CI01000005_06772433_06793278
CI01000005_06765592_06772165.mRNA mRNA downstream 244676 6765273 ~ 6772165 (-) True CI01000005_06765592_06772165
CI01000005_06721142_06724797.mRNA mRNA downstream 292008 6720908 ~ 6724833 (-) True CI01000005_06721142_06724797
CI01000005_06655061_06664135.mRNA mRNA downstream 352501 6654881 ~ 6664340 (-) True CI01000005_06655061_06664135
CI01000005_07035672_07037203.mRNA mRNA upstream 9403 7034777 ~ 7037276 (-) True CI01000005_07035672_07037203
CI01000005_07052874_07068345.mRNA mRNA upstream 27356 7052730 ~ 7068377 (-) True CI01000005_07052874_07068345
CI01000005_07093538_07094533.mRNA mRNA upstream 68108 7093482 ~ 7094569 (-) True CI01000005_07093538_07094533
CI01000005_07111233_07112234.mRNA mRNA upstream 85348 7110722 ~ 7112266 (-) True CI01000005_07111233_07112234
CI01000005_07143500_07144465.mRNA mRNA upstream 118108 7143482 ~ 7144565 (-) True CI01000005_07143500_07144465
TU45564 other downstream 533352 6480689 ~ 6483489 (-) True G40190
TU44763 other downstream 1182302 5833792 ~ 5834539 (-) True G39515
TU44762 other downstream 1182449 5833792 ~ 5834392 (-) False G39515
TU43542 other downstream 2615731 4381238 ~ 4401110 (-) True G38415
TU43637 other downstream 2810633 4204845 ~ 4206208 (-) True G38510
TU45920 other upstream 170421 7195795 ~ 7196428 (-) True G40487
TU46013 other upstream 500847 7526221 ~ 7532148 (-) True G40540

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011273 True 2505 mRNA 0.50 8 NC_007124.7 421231 ~ 430143 (+)