RNA id: TU43637



Basic Information


Item Value
RNA id TU43637
length 1364
RNA type TUCP
GC content 0.40
exon number 1
gene id G38510
representative True

Chromosome Information


Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 4204845 ~ 4206208 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGTCATGCAGAATAAGGCATTAATATGTGCTTTATAAGAACTGATAAACAGCCAATATCATAGTAATATGCATGCTAATAAGCAAGTAGTTAATTGAACCCTAAACCATGTTATGTTTAATGAACACAAAGAAAAGAATTAAAAAGAACACACACACAAAATTCCCTCCACAACCTCAAATCCACTTCTCTAAAATGGCTGCAGCGCCCCCTGTCTGCAACTCACACAAACTATGCAAAGACTCTGTGAGCGCCTACTACTGCTGTGCACCTGATCAACAAGGAAATCCTTTTACCAGCCATGTTTGAGCTGGATGCTGTGGAAAACTACCAGAGAAAGTTGGACGGACTGCAGTGGCCTCCCTTAAAATATCCAGTTCTCCTGAGCGAAAATGCAGAGTCATCACTCCGTCCTGCTGCACTGCGGGGAAGGAATGAGGCCATCGCTCCGTGCCACCTGGCTGCCGGACTGACACATGTTTATGCGGAGCATCAAATCTGCAGTGTCACAGCGCTGGCTGACCTCAGTGCAAATATCCTCACAGCCCTAATTATGCAGAGATCATGGCAAAGCATGCAGAAGCATGAACTTGTGTTTCCAGTAAAACTACCGTGTATATCTTTTTACTAATCCAGAAAACATCAACAAAGAGAAAGAGATATAACAGATTGGTGAGGATGCATTTATCGTGCAGTTTGGCCAAATATTGTGAATAACTGTGAACTATGAAACTGAAGGATAACTTCTGTTTCTGGAAAAAACATGTCATGAACACTACGCATGATATGAGTATGTACAGCACAGAGTAGCGCCCGCTCACTCGCTGCAAATTCAGACTTAAAGTGCCCTTATTATGCTTCTTATTTGGGATTTTACCTTCATGTAGCATGTAATATAGCAGCTGTTTGTGAAAGTAAAAGGTCTGCAAAGTTTCAAAGATCAAAGTGCATATAAATGGAGTTACTGTTTCCTAAAAGAAAGAAGCGATTCTGAACCGCCGAAATGAGTTGTCAGTAATTCCAGTCTCACTTCCTCCTGAACCTACATAGATTTGTAACAAATTTGCATAATGCCAGCCTACGGTCTTCATTAGCTGCCCACGAACAACATCTACTTTGACGCTCAAACACTGTAGTTGTATCTGAGACTGGAAGAGTTTGGTTCATGTTGTTTATGTCGAGATGCTGTTTTCTGCACTGCAAAATCAAATCCACTTTGCTGCACTTCAAAAGGATGAGGAATTAATACAGTAAAACCGACAACATCGTTACTGTTCACATCACTGTGCACCAAGTGTTGTGGAAGATCCGGAGCTGAAATTCAGATATGGTAATGGGTGTTGGTTTCCGACACACGCTGTAAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU43635 lncRNA downstream 230 4204247 ~ 4204615 (-) True G38508
TU43636 lncRNA downstream 715 4203859 ~ 4204130 (-) True G38509
TU43540 lncRNA downstream 9860 4191510 ~ 4194985 (-) True G38413
TU43538 lncRNA downstream 14140 4190451 ~ 4190705 (-) True G38411
TU43617 lncRNA downstream 68403 4136236 ~ 4136442 (-) True G38490
TU43638 lncRNA upstream 111 4206319 ~ 4209120 (-) True G38511
TU43548 lncRNA upstream 2940 4209148 ~ 4215199 (-) True G38421
TU43639 lncRNA upstream 9064 4215272 ~ 4215538 (-) True G38512
TU43644 lncRNA upstream 20518 4226726 ~ 4228565 (-) True G38517
TU43534 lncRNA upstream 90001 4296209 ~ 4299810 (-) True CI01000005_04296779_04299727
CI01000005_04161239_04162612.mRNA mRNA downstream 41599 4160972 ~ 4163246 (-) True CI01000005_04161239_04162612
CI01000005_03986570_03989555.mRNA mRNA downstream 215290 3986099 ~ 3989555 (-) True CI01000005_03986570_03989555
CI01000005_03714714_03715575.mRNA mRNA downstream 489204 3714273 ~ 3715641 (-) True CI01000005_03714714_03715575
CI01000005_03530548_03573901.mRNA mRNA downstream 630064 3530249 ~ 3574781 (-) True CI01000005_03530548_03573901
CI01000005_03494256_03497235.mRNA mRNA downstream 705828 3494077 ~ 3499017 (-) True CI01000005_03494256_03497235
CI01000005_04296779_04299727.mRNA mRNA upstream 90430 4296638 ~ 4299785 (-) False CI01000005_04296779_04299727
CI01000005_04332499_04357527.mRNA mRNA upstream 126282 4332490 ~ 4358857 (-) True CI01000005_04332499_04357527
CI01000005_04401277_04428207.mRNA mRNA upstream 195040 4401248 ~ 4428207 (-) True CI01000005_04401277_04428207
CI01000005_04443111_04445092.mRNA mRNA upstream 236845 4443053 ~ 4445092 (-) True CI01000005_04443111_04445092
CI01000005_04624198_04638644.mRNA mRNA upstream 417788 4623996 ~ 4638644 (-) True CI01000005_04624198_04638644
TU41481 other downstream 2315569 1883254 ~ 1889276 (-) False CI01000005_01883894_01899867
TU41482 other downstream 2315569 1883254 ~ 1889276 (-) True CI01000005_01883894_01899867
TU41598 other downstream 2540566 1663267 ~ 1664279 (-) False G36628
TU41601 other downstream 2540566 1663267 ~ 1664279 (-) True G36628
TU40958 other downstream 3161173 1021295 ~ 1043672 (-) True G36049
TU43542 other upstream 175030 4381238 ~ 4401110 (-) True G38415
TU44762 other upstream 1627584 5833792 ~ 5834392 (-) False G39515
TU44763 other upstream 1627584 5833792 ~ 5834539 (-) True G39515
TU45564 other upstream 2274481 6480689 ~ 6483489 (-) True G40190
TU45920 other upstream 2989587 7195795 ~ 7196428 (-) True G40487

Expression Profile