RNA id: TU44762


Basic Information

Item Value
RNA id TU44762
length 601
RNA type TUCP
GC content 0.44
exon number 1
gene id G39515
representative False

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 5833792 ~ 5834539 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACTGCTGACTTGGCAATGGTCCAGGAGACAATCATTGACACCCTCCACAAAGAGAGTAAGTCACAGAAGGTCATTACTGAATGGGGTGGCTGTTTACAGTGTGTATATCAAAGCATATTAAATGCAAAGTTGACTGGAAGGAAGAAATTGGGTAGGCAAAGGTGCACAAGCAATAGGGATGACCGCAAGCTTGAGAATACTGTCAAGTAAAGCCAATTCAAACACTTGGGAGAGCTTCACAATGAGTAGAATGAAGCCGGAGTCAGCGCATCAAGAGTCACCACACTCAGACATCTTCAGGAAAAGGACTACCAAGCCACTTCTGAACCAGAGACAATGTCAGAAGCATCTTACCTGGGCTAAGGAGAAAAAGAACTGGACAGTGAACAGTGGTCGAAAGTCCTCTTTTCAGATAAAAGTAAATTTTGCATTTCATGTTGAAATCATGGTCCCAGAGTCTGAAGGAAGACTGGAGAGGCACAGAATCCAAGCTGCTTGAAGTCTAGTGTGAAGTTTCTGAAGTCAATAATGATTTGGGGGGGCCGTGACGTCTGCTGGTGTTGGTCCATTGTGTTTTATCAAGTGCAAAGTCAATGCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44674 lncRNA downstream 221868 5611054 ~ 5611924 (-) True G39434
TU44474 lncRNA downstream 258286 5574753 ~ 5575506 (-) True G39246
TU44468 lncRNA downstream 264444 5568998 ~ 5569348 (-) True G39240
TU44462 lncRNA downstream 282159 5551032 ~ 5551633 (-) True G39235
TU44450 lncRNA downstream 300554 5532963 ~ 5533238 (-) True G39224
TU44697 lncRNA upstream 116414 5950806 ~ 5959446 (-) True G39452
TU44786 lncRNA upstream 159961 5994353 ~ 5994603 (-) True G39538
TU44701 lncRNA upstream 163678 5998070 ~ 5999081 (-) True G39456
TU44795 lncRNA upstream 223402 6057794 ~ 6059279 (-) True G39547
TU44836 lncRNA upstream 287236 6121628 ~ 6121833 (-) True G39587
CI01000005_05769088_05775489.mRNA mRNA downstream 58303 5769088 ~ 5775489 (-) True CI01000005_05769088_05775489
CI01000005_05691428_05726724.mRNA mRNA downstream 107068 5691428 ~ 5726724 (-) True CI01000005_05691428_05726724
CI01000005_05631288_05682552.mRNA mRNA downstream 151124 5629520 ~ 5682668 (-) True CI01000005_05631288_05682552
CI01000005_05613083_05619171.mRNA mRNA downstream 214621 5612913 ~ 5619171 (-) True CI01000005_05613083_05619171
CI01000005_05229309_05258055.mRNA mRNA downstream 573831 5229169 ~ 5259961 (-) False CI01000005_05229309_05258055
CI01000005_05839780_05888414.mRNA mRNA upstream 4520 5838912 ~ 5888414 (-) True CI01000005_05839780_05888414
CI01000005_05894901_05905611.mRNA mRNA upstream 60078 5894470 ~ 5906075 (-) True CI01000005_05894901_05905611
CI01000005_05986614_05997729.mRNA mRNA upstream 151839 5986231 ~ 5997729 (-) False CI01000005_05986614_05997729
CI01000005_06006736_06010521.mRNA mRNA upstream 170974 6005366 ~ 6010535 (-) True CI01000005_06006736_06010521
CI01000005_06037247_06040370.mRNA mRNA upstream 202314 6036706 ~ 6040632 (-) True CI01000005_06037247_06040370
TU43542 other downstream 1432682 4381238 ~ 4401110 (-) True G38415
TU43637 other downstream 1627584 4204845 ~ 4206208 (-) True G38510
TU41481 other downstream 3944516 1883254 ~ 1889276 (-) False CI01000005_01883894_01899867
TU41482 other downstream 3944516 1883254 ~ 1889276 (-) True CI01000005_01883894_01899867
TU41598 other downstream 4169513 1663267 ~ 1664279 (-) False G36628
TU45564 other upstream 646297 6480689 ~ 6483489 (-) True G40190
TU45920 other upstream 1361403 7195795 ~ 7196428 (-) True G40487
TU46013 other upstream 1691829 7526221 ~ 7532148 (-) True G40540

Expression Profile