RNA id: TU44701


Basic Information

Item Value
RNA id TU44701
length 537
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G39456
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 5998070 ~ 5999081 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTCATTTTTGGGTGAACTAACCCTTTAACTATCATTTTAGGGTGAACTATCCCTGTGACAGTTTCTCAATAAAAACATAACCGATATGTGCTAATGCTAACTGTCATCACTTACTTTAATCTCAACGTTTCTTGTTTTGAGATTAAATCGCACTTGAAGCTGCAGGTTTTCTACAATGGGAGTGAAAATTTTCATCCAGTTTTCTTTCAGGGGTGTGTAACGATGAGCAGGAACAGACACTTTCCGCATCTCATCTGATCCTCCCTGAGCTGGTCTCCAGATAAGGCTGGGAACTGCGGTCTCTTGGCCGCTACTGAACCCTCCGCCTGCATGTCCACTTCTGCCGCGTCCCGCTTGCGTTTGTGACTCCTCTTCGACTTCACTTTCTCAAACGCGTCTGTGTCTGTGTTTCCGTCACAGTCCATAGTAGCTGTCGCTTCTGCTGTCGTGTTTGTTACCGACTCCATCGTGAAATGAGATTTTAAAAACTACAGCTCAACAGAGATGTTTACCACGAACATGTGGCGTTTGCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44786 lncRNA downstream 3314 5994353 ~ 5994603 (-) True G39538
TU44697 lncRNA downstream 38624 5950806 ~ 5959446 (-) True G39452
TU44761 lncRNA downstream 163869 5833792 ~ 5834201 (-) False G39515
TU44674 lncRNA downstream 386146 5611054 ~ 5611924 (-) True G39434
TU44474 lncRNA downstream 422564 5574753 ~ 5575506 (-) True G39246
TU44795 lncRNA upstream 58713 6057794 ~ 6059279 (-) True G39547
TU44836 lncRNA upstream 122547 6121628 ~ 6121833 (-) True G39587
TU44853 lncRNA upstream 145044 6144125 ~ 6144906 (-) True G39600
TU45521 lncRNA upstream 217424 6216505 ~ 6221666 (-) True G40158
TU45530 lncRNA upstream 233631 6232712 ~ 6233376 (-) True G40165
CI01000005_05986614_05997729.mRNA mRNA downstream 341 5986231 ~ 5997729 (-) False CI01000005_05986614_05997729
CI01000005_05894901_05905611.mRNA mRNA downstream 91995 5894470 ~ 5906075 (-) True CI01000005_05894901_05905611
CI01000005_05839780_05888414.mRNA mRNA downstream 109656 5838912 ~ 5888414 (-) True CI01000005_05839780_05888414
CI01000005_05769088_05775489.mRNA mRNA downstream 222581 5769088 ~ 5775489 (-) True CI01000005_05769088_05775489
CI01000005_05691428_05726724.mRNA mRNA downstream 271346 5691428 ~ 5726724 (-) True CI01000005_05691428_05726724
CI01000005_06006736_06010521.mRNA mRNA upstream 6285 6005366 ~ 6010535 (-) True CI01000005_06006736_06010521
CI01000005_06037247_06040370.mRNA mRNA upstream 37625 6036706 ~ 6040632 (-) True CI01000005_06037247_06040370
CI01000005_06084718_06097051.mRNA mRNA upstream 85184 6084265 ~ 6097589 (-) True CI01000005_06084718_06097051
CI01000005_06116268_06121045.mRNA mRNA upstream 116544 6115625 ~ 6121045 (-) True CI01000005_06116268_06121045
CI01000005_06150035_06158315.mRNA mRNA upstream 149136 6148217 ~ 6158315 (-) True CI01000005_06150035_06158315
TU44763 other downstream 163531 5833792 ~ 5834539 (-) True G39515
TU44762 other downstream 163678 5833792 ~ 5834392 (-) False G39515
TU43542 other downstream 1596960 4381238 ~ 4401110 (-) True G38415
TU43637 other downstream 1791862 4204845 ~ 4206208 (-) True G38510
TU41482 other downstream 4108794 1883254 ~ 1889276 (-) True CI01000005_01883894_01899867
TU45564 other upstream 481608 6480689 ~ 6483489 (-) True G40190
TU45920 other upstream 1196714 7195795 ~ 7196428 (-) True G40487
TU46013 other upstream 1527140 7526221 ~ 7532148 (-) True G40540

Expression Profile