G39452


Basic Information

Item Value
gene id G39452
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 5950806 ~ 5959446 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU44697
TTAAAGATGACTGGATCAGCCACCATAACCTCATTAGACTCTAGCAGTAGCACATATTCCTTTACAACAAAGCACTTGGTATTTTAATAAATTGAAAGAAAAAGAAACATTTAGGTTTCCTTATAGAAGTCTGGATTAAAAGCGTGTACTTACCAGCTGCCCTTGAGTGATGTATTTTTTCCACCACAGGTATGGTCTTATGGCCGGGACGGCAGAGAGGCCGTAATACGAGTACATCAGGACATGGATGAAGCTGTTAAACGTGGCGCCAAAGTACGAGTGTCCACATGGCACCCAGTTCATGACGAACCACCAGATGTTGAGCATGGTGGCGTGATGGTAGACATGCAGGAAGGTGATCTGGTGGTTGTTCTTCCTCAGGATGAAGAAGAAAGTGTCCATAAACTCAATGAGTTTGGAGAAGTAATACCACCAGAGTACATTAATCATCCTATTGTCGGCCTCTCCTCCACTGTGGGTGTTCTGGCAGAAGAAGTTGTATCCGCCCTGATACACTGACATTACCAGCTGTAGAGACAGAAGGATAACAGAGTGAATGATTTACAGTGATTTACAGTTTACATTAACAAGACACAATGTATCCAGCTGGGTATCGTTCAAAAATTTTCGACATTGGTACTGATACCGATACCTTGACTTCGATACCGGTTTCTGAACGATACTTTTTTTGATAAAACAGATTTTATAAAATCGTTAACAACATTATGTTACCTCAAAAATTATGCCCAATACCCGCACCAAAATTCGAGCCCTGTTTCACTGACGTTGACGAGATTAACCCCTTTGGTATCGAAATTTGGTACCGAACAACAACATTTTTTGATACTCGATGGTATCGAGGCAATTCAGTCGGTGCCTAAAAAATATCAAACTCGATACCCTCTCGATACTCCATAGCCCTACTGCTAACGTTCCAATTAAGTAATGAAAACATTATGTAACTTTCAAATTGTCCAGTTTTTAAATTTTGGGGAGTTATGCAAACATTAAGGGAATATTCCATTTTATCATTTTGCAAACATTATGGGAATGGTACTTTTGAATGTTCTCTGAACGTTCTGAAACTAGTTGTAGTAACATTTAAAAATGTTACATGAACATCATGTTTCAGAAATAAAACATTCCATGGATGGCATATAAATGTTTTTGTGCTAACACTTTGAGAACATTATTAACTCTTACCCCGCCACTAACATTTTTTTTTTTTTTTTTTTTTGTCATTTATGACACAACGACATTCCATTGAAGGAATTTTCCAGCAATCCATGTTTTCACTGTTATACGGTAGGGAGCGCTATTACCAAGTGGCAACCTTCCGTTCTCTCTCTTGAAGCCAATACGGAAGTGATTAAACTGCAATTCATCGACTGGCCGCTAGAGACAGGCTCCAAAACAGAGTCAAATCTGTATCTCCACCATGTTAAAATGCCCAACTTTACAGCAGAAAAAAAAAAAATGTTTACAGCCTGGTACAAAAAGTGGTTTTGGTCTATATAGCTAATTCTGCCCTTCATGACAACTGTGAGGGGGGTGAATTTTTTATAACTCATCCGTTTAAATTATATAAAGCCTAAAATTTCTGCATAATTAAGGGCGTGGCCACTTGAGTGACAGGTGGATTGCCACTGCTGTCACTACTAGCCGTTTGTTAGTCGTCACGTCACCTCAGCTAATTCCAGCCGCTGAACTTGGCATCTCTGCCGTGTTTGTGCTTTTTTTCAGGATTATTTCGTACAATTATCAAATAATATGGCTTGCTGTGCAGTTAATTGTACTAACAGATTAAAAAAAAACACCTGTCATACGAGCTCTGATTTCTGAATAGTCAAGACAGATGTGCGTCTTTGTACATGTGCACACATCCGGAAAATAAATGAAACACATTGATGGATCGTCTTGGCATTGGCTAAAAGTTTTGTCCGTCAGATTTACTACAATGACATTGGCAAGAGAATATGCCTCTTAAGACACCACAAAATCTGACAGCACTGCTTGGATATTATAACTAAAACTGCTGCACTATTTTGAAAAATATACTTTGGACACGAGCTGATTTGTTTGTGAGAGCATAATGTATACGATCGTATACAGTTTTACAACAAACGCTGCTCAGGTTGCATAATTTCTTGAAGAACGATGATGGAGAGCAGATCGTTCAGAAGAAATATGATGAAAACTATGGACGATATATTAATATTTCATGGATTTAATGTTGTTTTTATGGACAAAAAGTGCTGTTGGATGTTTTTCAATGGACGCTTATCATGGATCAGATTGGATTCATCTCGCGATCGCTATTTCATTGCAAAGGTATGAAGTCCTGTTTTGATTTTGCGTGTTGTCATTTGCACACCCGACACAAATTACAATATTACTAGTGCTGGAGCATCTATATCATAAAACAGACACTGAAGATTGACAGTAAACCCTTAGAACTTTCAAATGATGTATAATTTGTTATCTTTATTAATATTTTAGATAGTATCTAAGATAGATAGATAGCTCCTTAGCCTGAGCTAACTTGATCACATCAAGCTAGGCAGGCGTGGTTTCAGAAACAAGGTACCTCAGCTCCACCCACATCCCTGCCTTCGATAATCCGGAAGTGACGCGTGGTGAAGCGATGCCAAGATGGCGACAGCCGGCTCCGCCCACTTTGGGCTTCAAAAATGCTCTTCAGAAACCTACGGGTGACGTCACAGACACTACGTCCATGTTCTATACAGACTATGGGTATTACACATCTTCTGAAAGAGTACAGAATCTCCAGATCAAAACACAGGCGAAGAAGCAGCAGAAACAAGCGACAGAAGCATTGCTTATGTACATTTAAGCGAATGCAATCATCAAACATTTAACATCATATAAATCAAAGCTGCCTAACGTCACTGAATGAAATGTTGAACCCATTAAGAGGAAACGACTGTGAAGCTTTGGGGGTGTTGATGGACTTGATCTACTCCATCTGTGTTTTGATCATCGCTCTGAATCCCATGCGGACGAAATCTTTGACAAAAAGTGTTCAAAATGTTGCTTTTTAAATGAATCTTACGCACATTCAAGTGTTGTTAAAAAAGAATGCATGAAGCTAGAATAAACTGTATGTAATGTATGTGATGTAATGTAACATGAATTCATGCGCACTGTTGCTGAAAACTGATGGCATATGGTTAAAAACGTTTGATGCTTCCTATCTATCAGAAATCTTGCAATTTCAACAAACAGGCCATCTAAACTCTCTCGCACACGAGTCATCTTTATTGTGAAGGTGGCTTTAAGTAAGTTTATTAATATTCTCTCCTGATAACTGAAGCCGAGCACAATATGAGCATCTGCAGAGGCTCGGAGGTGTAATGCTGATGCATGGAGATATTTTACTGCTGACTTGCACAGAAAGTAGATAAAAAAGGGCTTAATTTTTTAATTCTTTTGAACTATGATCTTGTTCTCACCTCTCACTGAACACTGTGCAGACCTCAGTAAAATCTCCCATGAGCCTCTAACGTGTCATTGTTCATTGTCTCATTCTGAATAAAGTCCTTGTTCTTTCTGCTAAAGTTTTTTTAGCAAATGCAGAATGAAAGCTGCACATCTGTTCCCTATGTATAAATCTTATACTAAACCTCAAAAAACGTTCTCATTATTGCCTGACCTCATGTTACAGGGGGACATCTCGATTTAAATAACCTCTTTAAAAGGACATTCAGGGGACATAAAGGGCCATTCAACTGTCCCAATATAGCCCTAATTGCTTTGGCCTGATAGAGCTTCTCAAGGTCAGTGGGTTGATTTTGCCGTTAGAGAAACTGTCACAGGACGGCGTGCACCGCTGCCTCTCTCTAAAGTCCTAAAGCGCAGTCCCAGCTCTCACTATCTGACTCGGCTCATTCCTCATTAAATGAAATAACTTACAGACTGTTTCAGCATTCCCACAGCAGTTGGGAAATGGATAGATAAGGTCCGCTTGAAAGGGAAGTTGAACTAGTCTTTTCTTCTCTGTTGTGCCGTATATCCAAGTGAAATGGCTTCTCAAACAAGAACAGATGTAGGGCGGGGCTTGATTTTGTCCATGGGGAACTGATTGGATGGTTGTGGTTTGCTATTGGTGGATCTCATGTGAATGACAGGTTGCCCCGCCCTCATCATCAGAGAAGAGAAGAGATGTCACTCCAACAGCGAGGGGAAGATATTCTGATTCAAAATTATGAGTAGTAGCGGCCTTTGCTGTGTTTCACCCGTTTCACTTGAATCGGGCCTAGCAACAAAAGGAGCTTCCACTTGTGCTCGAAAAAGAGCTCCGTCCCCTGCCATCATGCACGCACCAGGGTCGGAAATTAACGGGGGGCTTAGGGCAAAAGTGCCACCAAAATGAATAAAAATGCCCCTAAAATTCAAGATATGGTGCAAAAAAAAGTCCCTGTATAAGTTCTTGCTTTTAATATTTATAAAGGATATAGCCCGTTGAGCCTCAGGTCCTGCAACCACCATCAGCGCCTGAGTGGGTAGATCCTGTGGCTCCGCCTCCGGCATCAGATCGTCTTGCTCAGTCAACCTGTTGGCTCCACCCTGGCTCCTCCCACCTTCGGCTCCACCAGACACCCTCGGCCTTTCAGCTCCACCGCGTTCCTTCATCCCACCGGCTCCCCCTTGTTCAGTTGTCACTCCACCTTCGCCACGGACTTGCTGACCTTCCGCTACGCTCCGTTCCTCCACCCCTACGGCTGCAGCGGGCTCCTCTTTCCTTTTGGGTTCACCTCGGTCCTCCATCACACCGAAGTCACCTCAGTCCTCGGGCAGTCTGGCTCCACCTCAGACGATTGTCGACACAGGCCTCAGATGCCAGCGATGTCGCTCTTCTCCATCGCCGCTCCGCCTCCATTGGTCGTCCCCCAGTTGACGTCAGCCTCCACACCACCTTGGTTCCTTCCTCCCTCGAATCCACCGTGGGCTGTCGTCTCTGGGCTCTAGGTCTGTGCCGTTGGACGCACTTCATCATCGCCGCTGGGGTCTCGTCATCTGTATTGCACCATCCCCTCATCATCTCCTGTCCTCGCTGTATCATCACCTCGGCCCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU44697 True 5096 lncRNA 0.32 3 5950806 5959446

Neighbor

gene id symbol gene type direction distance location
CI01000005_05894901_05905611 NA coding downstream 44731 5894470 ~ 5906075 (-)
CI01000005_05839780_05888414 LRRC1 coding downstream 62392 5838912 ~ 5888414 (-)
CI01000005_05769088_05775489 MLIP coding downstream 175317 5769088 ~ 5775489 (-)
CI01000005_05691428_05726724 FAM83B coding downstream 224082 5691428 ~ 5726724 (-)
CI01000005_05631288_05682552 HCRTR2, FFAR4 coding downstream 268138 5629520 ~ 5682668 (-)
CI01000005_05986614_05997729 WDR92 coding upstream 26785 5986231 ~ 5997729 (-)
CI01000005_06006736_06010521 PPP3R1.S, CANB1, PPP3R1, PPP3R1A, PPP3R1B coding upstream 45920 6005366 ~ 6010535 (-)
CI01000005_06037247_06040370 CNRIP1B, CNRIP1 coding upstream 77260 6036706 ~ 6040632 (-)
CI01000005_06084718_06097051 NA coding upstream 124819 6084265 ~ 6097589 (-)
CI01000005_06116268_06121045 NA coding upstream 156179 6115625 ~ 6121045 (-)
G39515 NA non-coding downstream 116605 5833792 ~ 5834539 (-)
G39434 NA non-coding downstream 338882 5611054 ~ 5611924 (-)
G39246 NA non-coding downstream 375300 5574753 ~ 5575506 (-)
G39240 NA non-coding downstream 381458 5568998 ~ 5569348 (-)
G39235 NA non-coding downstream 399173 5551032 ~ 5551633 (-)
G39456 NA non-coding upstream 38624 5998070 ~ 5999081 (-)
G39547 NA non-coding upstream 98348 6057794 ~ 6059279 (-)
G39587 NA non-coding upstream 162182 6121628 ~ 6121833 (-)
G39600 NA non-coding upstream 184679 6144125 ~ 6144906 (-)
G38415 NA other downstream 1549696 4381238 ~ 4401110 (-)
G38510 NA other downstream 1744598 4204845 ~ 4206208 (-)
CI01000005_01883894_01899867 NA other downstream 4061530 1883222 ~ 1899867 (-)
G36628 NA other downstream 4286527 1663267 ~ 1664279 (-)
CI01000005_06481721_06483251 NA other upstream 521243 6481355 ~ 6483265 (-)
G40487 NA other upstream 1236349 7195795 ~ 7196428 (-)
G40540 NA other upstream 1566775 7526221 ~ 7532148 (-)

Expression


Co-expression Network