RNA id: CI01000005_05229309_05258055.mRNA


Basic Information

Item Value
RNA id CI01000005_05229309_05258055.mRNA
length 2847
RNA type mRNA
GC content 0.38
exon number 4
gene id CI01000005_05229309_05258055
representative False

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 5229074 ~ 5259961 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAAGCTTTCTTGAAGAAAGAGGTAATGATGGAACAGCAGGTGAACGATGCCCCCTTCAGGATGCCAAAAAATCTGTGTTTTCTTGCTTTCCGATCACAGCATTCTTCCACATACCAATGAGTCAACTCTCCATAAAACTAAGATAAACTTACTGTGAAGACTTCAGGAAACAATAACTAGGCTATTACCAAAGTAAATTGGAGTCAAAGGTCACTAACACTCATAAATAGCTCATTTTACAGCTCAATTCTTCAATAGTGCCACAGTGACTCATGTTTATTTTATATTTTTCAACTCAGTCTTTGCGAAAGTAAACAAGCCCGTGCCTGACGACACGCAATATTCAGAGAGTGATGACTACAGCTGTTTTGCTGCAATACACATATCACTTATAAACACATTACGGTTCATAAATCACGGCAAGCTGAAGAGGCGTATGAAGTGACTCCTATTTCATAGATGTGGCTGGTGTTTGTACATGAGTCGACAAAAATTGTTGCTGAATAGCTGAACTGTTTGAAACAGGTCTCTGTTAAAGGTTTCTTTTGTATTTTTTAAATACGAATCATTAAAATGTGTTCCAAAACCATTTGGTGCCGCTAGTGGTGCAGAAATGACACGCTTTACTTTTAAAGAGATGGTCGCAAAGGCGATTTTGAGTGATAGTGTGTGTTCAAAATGCCTGACACGCATCCCACATCAAATAAAATGCTTATCGCATGATATCTTGCCAGAACAAAAACCTTGAGTATTCAAGTTACAATATCCAGTAAAGCTTTTAAAAACAATCGATGGCGTCAGGACGCAGCATGTTTGCCTTTAAAAATGTAGTGCTAAAGTAATTCTAGAAAAACATAAAATTTACTTGACCACCATTTGACCTTTCCTCTTCGAGGAAAAGAATAGGTTGTAAAGCGACTATGTTGATATATGATGACAGTAGCACAAAATAACAGAAAATCACACTACAACAGGACAAACCCTCAGAGCTGAATCACACAGCCTCAGATCATCTCTGCTTACAAAAAATAATAACACCTTAAGCTTAAGTCAACTATCCAGCAAAATCAAAATTCTGTATTTTGCTGAAAGAAAATGAAAACAAATTAGAGATTCTTCACTTTCATAGCAATTAAGTGTTGCTCTCAAATTCTCAGTTTAGACATTTCATTTTTGCATTTTTTTTGTAGCAATAATGAAAAAAAATATCTATAAATTATTTTAAAAATAAGGTCACAATGCAAAACAAAACTTAATTTTAATTTTAAAACTTTAATTTCTTTATGCAAAGTAAATTTGAATGAAATATAAACTCTATTTAGGGTGAACCTGGACATGTTTAGGTTTCAGAGATTCACACATGAAATATGTGTGCACAGCAGTGATAATTTAGTTATTATAGTTTTTATGAATATTTTGAATTAGTTTTTATTTTTATATTTTCTGGTTTCATTTTAATTTTAGCTAAAATTTTAGTAATTTTGTTGTATGTTTTTGACATGGTTATGAGATTTATTTTTAAATATGTCTATGTACTTTTTTATTATTTTTATTTTAGTTTTAGTTATTTTAGTCCAAGTTAAACTAAATGAAAGCAAGAAATGTTGCTTTGGCAACTAGCTGAAATAAGTTTAAGTTTTTGTATATTTTATATTATTTCAGTTAATGTTCATTTTATTTCAAGTAATGGAAATATTTGTGGTTTCACTTTTAGTTATCTATAATATAATGTGTGTGTGTGTGTGTGTGTGTGTGTTAAAAACCTGAACCAAACCTGAAAACAATCCCATAAAATTTATTCATAGCATATAATTTTCTGTCATTTTCTTGTTTTTCTCAGCTTCTCATACATCGCTTCTTCAGGTTTAATATGTAACCTCAAGGTTTTTCGCCTCATTAAGCACAATGTTTCTTCCTCAGTCAGCAAGCAAAGGACTTTGCATACAGTACAGCAGTGCCACATACAGAACATCAGTGGACTGGGGAGGAAGTGCGGTCTGGGCTGAGAACGGCCTTGTCTATGACCAGCCACTCCAACAAAATACAGATCTCCTGTCATCACCAGCTGTATGGCATTTATGCCAGTTATTGTGCCAATATTCACCTGGGCTCATTAGGGTGCTGCTGAAACCCTTTCGTGAAATATCTGGAAATCTCCTGATCAAAGCTCACACAATATCCGGACAGAAAACAACACATCAGTGGTCGATGGTGTGTCATGTGACAGTGGACCGTTTGGCATTTGCTCTGCCAGTGTTTCAGCTGGCCAGAGACCCTGTGACAGTATCTGTGACCCGGAGCCTCATCACAGCACATCCTCGTACGCCTGGAGGTACTCCAATTCGTCGGCGAGCATATACGGAGCCGGTCCGTAACGGGCCATTGCCGGGGCGGTCGAGGCTGGTCATTTACCAGCCGCACAAGCGAACTGAAGCCCTGCCCGTCTGCCTGACCGATGAGCGCCGCTGCTTCATGACCGGCGACGCCCTGCTTCCCTCCCACATCCACAAACCGGCCAATGAGCGGGACTTCCTCTGCCGATTCAGCCGTAAATCTCAGCCGTTCGGCCGGCGCACGCTGGTGTTCACTGGCTGCCATGTGTCTATGACACAAGCGATGCGCGTGCACGTGCTCTCCAAGGTCCTAGAACCAGAAGATTCCTGCCCTCGCGCTTGCAACGGGAACATGATGGCGCTGAACCACTGACATTTACATCTTTTCAAGCAGACACCGACCAATCAGAACTTTTATAACACTTAATACAATGCAGCTTTGTTTCTACTTTCACAATGCATGTTATGATATCTGTGTCTATTATTATTGTTCTATAAAACCATTAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44134 lncRNA downstream 153906 5059859 ~ 5075263 (-) False G38937
TU44127 lncRNA downstream 153906 5067742 ~ 5075263 (-) False G38937
TU44129 lncRNA downstream 153906 5069212 ~ 5075263 (-) True G38937
TU44188 lncRNA downstream 215181 5013690 ~ 5013988 (-) True G38984
TU44187 lncRNA downstream 215838 5012906 ~ 5013331 (-) True G38983
TU44253 lncRNA upstream 82465 5342426 ~ 5348279 (-) True G39042
TU44254 lncRNA upstream 127088 5387049 ~ 5396181 (-) True G39043
TU44335 lncRNA upstream 158033 5417994 ~ 5418197 (-) True G39119
TU44344 lncRNA upstream 188432 5448393 ~ 5448710 (-) True G39124
TU44345 lncRNA upstream 189222 5449183 ~ 5449458 (-) True G39125
CI01000005_05198676_05204140.mRNA mRNA downstream 25005 5198594 ~ 5204164 (-) True CI01000005_05198676_05204140
CI01000005_05164991_05171380.mRNA mRNA downstream 57789 5164991 ~ 5171380 (-) True CI01000005_05164991_05171380
CI01000005_05157829_05163163.mRNA mRNA downstream 66006 5157713 ~ 5163163 (-) True CI01000005_05157829_05163163
CI01000005_05027999_05030374.mRNA mRNA downstream 198795 5027634 ~ 5030374 (-) True CI01000005_05027999_05030374
CI01000005_04970033_04970793.mRNA mRNA downstream 258151 4969371 ~ 4971018 (-) True CI01000005_04970033_04970793
CI01000005_05613083_05619171.mRNA mRNA upstream 352952 5612913 ~ 5619171 (-) True CI01000005_05613083_05619171
CI01000005_05631288_05682552.mRNA mRNA upstream 369559 5629520 ~ 5682668 (-) True CI01000005_05631288_05682552
CI01000005_05691428_05726724.mRNA mRNA upstream 431467 5691428 ~ 5726724 (-) True CI01000005_05691428_05726724
CI01000005_05769088_05775489.mRNA mRNA upstream 509127 5769088 ~ 5775489 (-) True CI01000005_05769088_05775489
CI01000005_05839780_05888414.mRNA mRNA upstream 578951 5838912 ~ 5888414 (-) True CI01000005_05839780_05888414
TU43542 other downstream 828059 4381238 ~ 4401110 (-) True G38415
TU43637 other downstream 1022961 4204845 ~ 4206208 (-) True G38510
TU41481 other downstream 3339893 1883254 ~ 1889276 (-) False CI01000005_01883894_01899867
TU41482 other downstream 3339893 1883254 ~ 1889276 (-) True CI01000005_01883894_01899867
TU41601 other downstream 3564890 1663267 ~ 1664279 (-) True G36628
TU44762 other upstream 573831 5833792 ~ 5834392 (-) False G39515
TU44763 other upstream 573831 5833792 ~ 5834539 (-) True G39515
TU45564 other upstream 1220728 6480689 ~ 6483489 (-) True G40190
TU45920 other upstream 1935834 7195795 ~ 7196428 (-) True G40487
TU46013 other upstream 2266260 7526221 ~ 7532148 (-) True G40540

Expression Profile