CI01000005_05229309_05258055


Basic Information

Item Value
gene id CI01000005_05229309_05258055
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 5229074 ~ 5259961 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_05229309_05258055.mRNA
AGAAGCTTTCTTGAAGAAAGAGGTAATGATGGAACAGCAGGTGAACGATGCCCCCTTCAGGATGCCAAAAAATCTGTGTTTTCTTGCTTTCCGATCACAGCATTCTTCCACATACCAATGAGTCAACTCTCCATAAAACTAAGATAAACTTACTGTGAAGACTTCAGGAAACAATAACTAGGCTATTACCAAAGTAAATTGGAGTCAAAGGTCACTAACACTCATAAATAGCTCATTTTACAGCTCAATTCTTCAATAGTGCCACAGTGACTCATGTTTATTTTATATTTTTCAACTCAGTCTTTGCGAAAGTAAACAAGCCCGTGCCTGACGACACGCAATATTCAGAGAGTGATGACTACAGCTGTTTTGCTGCAATACACATATCACTTATAAACACATTACGGTTCATAAATCACGGCAAGCTGAAGAGGCGTATGAAGTGACTCCTATTTCATAGATGTGGCTGGTGTTTGTACATGAGTCGACAAAAATTGTTGCTGAATAGCTGAACTGTTTGAAACAGGTCTCTGTTAAAGGTTTCTTTTGTATTTTTTAAATACGAATCATTAAAATGTGTTCCAAAACCATTTGGTGCCGCTAGTGGTGCAGAAATGACACGCTTTACTTTTAAAGAGATGGTCGCAAAGGCGATTTTGAGTGATAGTGTGTGTTCAAAATGCCTGACACGCATCCCACATCAAATAAAATGCTTATCGCATGATATCTTGCCAGAACAAAAACCTTGAGTATTCAAGTTACAATATCCAGTAAAGCTTTTAAAAACAATCGATGGCGTCAGGACGCAGCATGTTTGCCTTTAAAAATGTAGTGCTAAAGTAATTCTAGAAAAACATAAAATTTACTTGACCACCATTTGACCTTTCCTCTTCGAGGAAAAGAATAGGTTGTAAAGCGACTATGTTGATATATGATGACAGTAGCACAAAATAACAGAAAATCACACTACAACAGGACAAACCCTCAGAGCTGAATCACACAGCCTCAGATCATCTCTGCTTACAAAAAATAATAACACCTTAAGCTTAAGTCAACTATCCAGCAAAATCAAAATTCTGTATTTTGCTGAAAGAAAATGAAAACAAATTAGAGATTCTTCACTTTCATAGCAATTAAGTGTTGCTCTCAAATTCTCAGTTTAGACATTTCATTTTTGCATTTTTTTTGTAGCAATAATGAAAAAAAATATCTATAAATTATTTTAAAAATAAGGTCACAATGCAAAACAAAACTTAATTTTAATTTTAAAACTTTAATTTCTTTATGCAAAGTAAATTTGAATGAAATATAAACTCTATTTAGGGTGAACCTGGACATGTTTAGGTTTCAGAGATTCACACATGAAATATGTGTGCACAGCAGTGATAATTTAGTTATTATAGTTTTTATGAATATTTTGAATTAGTTTTTATTTTTATATTTTCTGGTTTCATTTTAATTTTAGCTAAAATTTTAGTAATTTTGTTGTATGTTTTTGACATGGTTATGAGATTTATTTTTAAATATGTCTATGTACTTTTTTATTATTTTTATTTTAGTTTTAGTTATTTTAGTCCAAGTTAAACTAAATGAAAGCAAGAAATGTTGCTTTGGCAACTAGCTGAAATAAGTTTAAGTTTTTGTATATTTTATATTATTTCAGTTAATGTTCATTTTATTTCAAGTAATGGAAATATTTGTGGTTTCACTTTTAGTTATCTATAATATAATGTGTGTGTGTGTGTGTGTGTGTGTGTTAAAAACCTGAACCAAACCTGAAAACAATCCCATAAAATTTATTCATAGCATATAATTTTCTGTCATTTTCTTGTTTTTCTCAGCTTCTCATACATCGCTTCTTCAGGTTTAATATGTAACCTCAAGGTTTTTCGCCTCATTAAGCACAATGTTTCTTCCTCAGTCAGCAAGCAAAGGACTTTGCATACAGTACAGCAGTGCCACATACAGAACATCAGTGGACTGGGGAGGAAGTGCGGTCTGGGCTGAGAACGGCCTTGTCTATGACCAGCCACTCCAACAAAATACAGATCTCCTGTCATCACCAGCTGTATGGCATTTATGCCAGTTATTGTGCCAATATTCACCTGGGCTCATTAGGGTGCTGCTGAAACCCTTTCGTGAAATATCTGGAAATCTCCTGATCAAAGCTCACACAATATCCGGACAGAAAACAACACATCAGTGGTCGATGGTGTGTCATGTGACAGTGGACCGTTTGGCATTTGCTCTGCCAGTGTTTCAGCTGGCCAGAGACCCTGTGACAGTATCTGTGACCCGGAGCCTCATCACAGCACATCCTCGTACGCCTGGAGGTACTCCAATTCGTCGGCGAGCATATACGGAGCCGGTCCGTAACGGGCCATTGCCGGGGCGGTCGAGGCTGGTCATTTACCAGCCGCACAAGCGAACTGAAGCCCTGCCCGTCTGCCTGACCGATGAGCGCCGCTGCTTCATGACCGGCGACGCCCTGCTTCCCTCCCACATCCACAAACCGGCCAATGAGCGGGACTTCCTCTGCCGATTCAGCCGTAAATCTCAGCCGTTCGGCCGGCGCACGCTGGTGTTCACTGGCTGCCATGTGTCTATGACACAAGCGATGCGCGTGCACGTGCTCTCCAAGGTCCTAGAACCAGAAGATTCCTGCCCTCGCGCTTGCAACGGGAACATGATGGCGCTGAACCACTGACATTTACATCTTTTCAAGCAGACACCGACCAATCAGAACTTTTATAACACTTAATACAATGCAGCTTTGTTTCTACTTTCACAATGCATGTTATGATATCTGTGTCTATTATTATTGTTCTATAAAACCATTAAAATAAA
>TU44279
ATTGTTCACAGCAGGTCAGCAAACCTGCATGTACACTGTAACAATCAGCCATGTATGAATTAATGTAACACTGTATCACGCTGATGTTCTGACTGTTAACTGTCGCGCTGCCATTTGGGAGCGACAGGGTTATTAAGCAAAATTCCACCCATTTGATTCACCAAACGGCCGAACTGAATTCATTCTTTACCTTTATATTTCTCAAGCACATCCTCGTACGCCTGGAGGTACTCCAATTCGTCGGCGAGCATATACGGAGCCGGTCCGTAACGGGCCATTGCCGGGGCGGTCGAGGCTGGTCATTTACCAGCCGCACAAGCGAACTGAAGCCCTGCCCGTCTGCCTGACCGATGAGCGCCGCTGCTTCATGACCGGCGACGCCCTGCTTCCCTCCCACATCCACAAACCGGCCAATGAGCGGGACTTCCTCTGCCGATTCAGCCGTAAATCTCAGCCGTTCGGCCGAGGCGCACGCTGGTGTTCACTGGCTGCCATGTGTCTATGACACAAGCGATGCGCGTGCACGTGCTCTCCAAGGTCCTAGAACCAGAAGATTCCTGCCCTCGCGCTTGCAACGGGAACATGATGGCGCTGAACCACTGACATTTACATCTTTTCAAGCAGACACCGACCAATCAGAACTTTTATAACACTTAATACAATGCAGCTTTGTTTCTACTTTCACAATGCATGTTATGATATCTGTGTCTATTATTATTGTTCTATAAAACCATTAAAATAAAAACTATTTCTCATATAGATACCAAATGATGAGCATGCAGACTGTCTGTATCATAGACTGTAAAAAAGGTCTGTATACAGACTATTAAGGTTTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_05229309_05258055.mRNA False 2847 mRNA 0.38 4 5229169 5259961
TU44279 True 838 lncRNA 0.47 2 5229074 5230154

Neighbor

gene id symbol gene type direction distance location
CI01000005_05198676_05204140 NA coding downstream 25005 5198594 ~ 5204164 (-)
CI01000005_05164991_05171380 ZNF451 coding downstream 57789 5164991 ~ 5171380 (-)
CI01000005_05157829_05163163 BAG2 coding downstream 66006 5157713 ~ 5163163 (-)
CI01000005_05027999_05030374 NA coding downstream 198795 5027634 ~ 5030374 (-)
CI01000005_04970033_04970793 OLIG3 coding downstream 258151 4969371 ~ 4971018 (-)
CI01000005_05613083_05619171 NA coding upstream 352952 5612913 ~ 5619171 (-)
CI01000005_05631288_05682552 HCRTR2, FFAR4 coding upstream 369559 5629520 ~ 5682668 (-)
CI01000005_05691428_05726724 FAM83B coding upstream 431467 5691428 ~ 5726724 (-)
CI01000005_05769088_05775489 MLIP coding upstream 509127 5769088 ~ 5775489 (-)
CI01000005_05839780_05888414 LRRC1 coding upstream 578951 5838912 ~ 5888414 (-)
G38937 NA non-coding downstream 153906 5059859 ~ 5075263 (-)
G38984 NA non-coding downstream 215181 5013690 ~ 5013988 (-)
G38983 NA non-coding downstream 215838 5012906 ~ 5013331 (-)
G38978 NA non-coding downstream 221447 5007508 ~ 5007722 (-)
G38963 NA non-coding downstream 238553 4990383 ~ 4990616 (-)
G39042 NA non-coding upstream 82465 5342426 ~ 5348279 (-)
G39043 NA non-coding upstream 127088 5387049 ~ 5396181 (-)
G39119 NA non-coding upstream 158033 5417994 ~ 5418197 (-)
G39124 NA non-coding upstream 188432 5448393 ~ 5448710 (-)
G39125 NA non-coding upstream 189222 5449183 ~ 5449458 (-)
G38415 NA other downstream 828059 4381238 ~ 4401110 (-)
G38510 NA other downstream 1022961 4204845 ~ 4206208 (-)
CI01000005_01883894_01899867 NA other downstream 3339893 1883222 ~ 1899867 (-)
G36628 NA other downstream 3564890 1663267 ~ 1664279 (-)
G36049 NA other downstream 4185497 1021295 ~ 1043672 (-)
G39515 NA other upstream 573831 5833792 ~ 5834539 (-)
CI01000005_06481721_06483251 NA other upstream 1220728 6481355 ~ 6483265 (-)
G40487 NA other upstream 1935834 7195795 ~ 7196428 (-)
G40540 NA other upstream 2266260 7526221 ~ 7532148 (-)
G39078 NA non-coding upstream 18479 5248633 ~ 5252265 (-)

Expression


Co-expression Network