RNA id: CI01000005_05198676_05204140.mRNA


Basic Information

Item Value
RNA id CI01000005_05198676_05204140.mRNA
length 865
RNA type mRNA
GC content 0.47
exon number 6
gene id CI01000005_05198676_05204140
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 5198594 ~ 5204164 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTGAACAGGATCATCAAGCCATCATGAGGTCTTTGGTTTTCCTTATGTTTCTCAGCACAGCATATGATGACAACAGACATTCAATGTATGCAGTTGCTGAAAATGATTTCAAGATTGTTGGAGGATATGAATGCAAGCCTCATTCCCAGCCCTGGATGGTGTTTCTGCGTGCGACTTCTCACCAATGCGGTGGAACCCTGATCAATCAGAACTGGGTTCTGTCAGCTGCCCACTGCTACAGCTCCCATATAGAGGTTCGTCTGGGTAAACACAACATTGCGGAGGATGAGAGTAGCGAGCAGTCCATCCTTTCTGAGCTTGTCATTCCTCACCCCCAGTTTGAGTCTTCCACCCTTGACAATGACATCATGCTGATAAAGTTGAGCAAACCTGCGACTCTCAGTGAGAATGTGAAGCCTCTGGACTTGCCCAAAAGCTGTGCTCCTCCTGATACCATGTGCAGAGTCTCCGGCTGGGGAATCACCATGAGCGAGACCACTGATTCTGATAAGCTGCAGTGTCTGAATCTTCCCATCATCTCCGATCGTGACTGTAACATTTCCTACACTGGCCTAATCACTGGCTCCATGTTCTGCGCTGGATACCTGGAGGGAGGAAAGGGCGTTTGCCAGGGTGACTCTGGTGGTCCTATGGTGTGTAATGGTGAGATACAGGGTATTGTGTCAGCGGGTGGCCGTTGTGCTGGAAAAGATCAGCCTGGTATTTTTACTAAGGTCTGCCTGTTCAACACCTGGATCACTGAGACTATAAACAAATACTAAAAACTGCTTAAGATTCCACACAACTGAATATTCCCAGTGTGAAACCTGTCGACAGTTTATATTGATTTAATGTGCAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44134 lncRNA downstream 123331 5059859 ~ 5075263 (-) False G38937
TU44127 lncRNA downstream 123331 5067742 ~ 5075263 (-) False G38937
TU44129 lncRNA downstream 123331 5069212 ~ 5075263 (-) True G38937
TU44188 lncRNA downstream 184606 5013690 ~ 5013988 (-) True G38984
TU44187 lncRNA downstream 185263 5012906 ~ 5013331 (-) True G38983
TU44279 lncRNA upstream 24910 5229074 ~ 5230154 (-) True CI01000005_05229309_05258055
TU44291 lncRNA upstream 44469 5248633 ~ 5252265 (-) True G39078
TU44253 lncRNA upstream 138262 5342426 ~ 5348279 (-) True G39042
TU44254 lncRNA upstream 182885 5387049 ~ 5396181 (-) True G39043
TU44335 lncRNA upstream 213830 5417994 ~ 5418197 (-) True G39119
CI01000005_05164991_05171380.mRNA mRNA downstream 27214 5164991 ~ 5171380 (-) True CI01000005_05164991_05171380
CI01000005_05157829_05163163.mRNA mRNA downstream 35431 5157713 ~ 5163163 (-) True CI01000005_05157829_05163163
CI01000005_05027999_05030374.mRNA mRNA downstream 168220 5027634 ~ 5030374 (-) True CI01000005_05027999_05030374
CI01000005_04970033_04970793.mRNA mRNA downstream 227576 4969371 ~ 4971018 (-) True CI01000005_04970033_04970793
CI01000005_04883863_04894229.mRNA mRNA downstream 304365 4882284 ~ 4894229 (-) True CI01000005_04883863_04894229
CI01000005_05229309_05258055.mRNA mRNA upstream 25005 5229169 ~ 5259961 (-) False CI01000005_05229309_05258055
CI01000005_05613083_05619171.mRNA mRNA upstream 408749 5612913 ~ 5619171 (-) True CI01000005_05613083_05619171
CI01000005_05631288_05682552.mRNA mRNA upstream 425356 5629520 ~ 5682668 (-) True CI01000005_05631288_05682552
CI01000005_05691428_05726724.mRNA mRNA upstream 487264 5691428 ~ 5726724 (-) True CI01000005_05691428_05726724
CI01000005_05769088_05775489.mRNA mRNA upstream 564924 5769088 ~ 5775489 (-) True CI01000005_05769088_05775489
TU43542 other downstream 797484 4381238 ~ 4401110 (-) True G38415
TU43637 other downstream 992386 4204845 ~ 4206208 (-) True G38510
TU41481 other downstream 3309318 1883254 ~ 1889276 (-) False CI01000005_01883894_01899867
TU41482 other downstream 3309318 1883254 ~ 1889276 (-) True CI01000005_01883894_01899867
TU41601 other downstream 3534315 1663267 ~ 1664279 (-) True G36628
TU44762 other upstream 629628 5833792 ~ 5834392 (-) False G39515
TU44763 other upstream 629628 5833792 ~ 5834539 (-) True G39515
TU45564 other upstream 1276525 6480689 ~ 6483489 (-) True G40190
TU45920 other upstream 1991631 7195795 ~ 7196428 (-) True G40487
TU46013 other upstream 2322057 7526221 ~ 7532148 (-) True G40540

Expression Profile