RNA id: TU44335


Basic Information

Item Value
RNA id TU44335
length 204
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G39119
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 5417994 ~ 5418197 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGTTTTACCACACTAACAAGCACTGTAGCTGTGTCCCAATTCTTCAGAGGTTGCAGACTTCAAAGGCATCTGCGAAGGTCGGAGTGGGTGTTGTTAAATGGGACAGTCTAGATAGGAAGGATAGTTCTTGTTGCCTAGCAACTGTGACAGCTGGCGTTGACAAGCAGCAGTAACATTTGTACTGGACTTTTTTTTTTTTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44254 lncRNA downstream 21813 5387049 ~ 5396181 (-) True G39043
TU44253 lncRNA downstream 69715 5342426 ~ 5348279 (-) True G39042
TU44291 lncRNA downstream 165729 5248633 ~ 5252265 (-) True G39078
TU44279 lncRNA downstream 187840 5229074 ~ 5230154 (-) True CI01000005_05229309_05258055
TU44127 lncRNA downstream 342731 5067742 ~ 5075263 (-) False G38937
TU44344 lncRNA upstream 30196 5448393 ~ 5448710 (-) True G39124
TU44345 lncRNA upstream 30986 5449183 ~ 5449458 (-) True G39125
TU44346 lncRNA upstream 32492 5450689 ~ 5451019 (-) True G39126
TU44423 lncRNA upstream 66790 5484987 ~ 5496669 (-) True G39201
TU44449 lncRNA upstream 111198 5529395 ~ 5530410 (-) True G39223
CI01000005_05229309_05258055.mRNA mRNA downstream 158033 5229169 ~ 5259961 (-) False CI01000005_05229309_05258055
CI01000005_05198676_05204140.mRNA mRNA downstream 213830 5198594 ~ 5204164 (-) True CI01000005_05198676_05204140
CI01000005_05164991_05171380.mRNA mRNA downstream 246614 5164991 ~ 5171380 (-) True CI01000005_05164991_05171380
CI01000005_05157829_05163163.mRNA mRNA downstream 254831 5157713 ~ 5163163 (-) True CI01000005_05157829_05163163
CI01000005_05027999_05030374.mRNA mRNA downstream 387620 5027634 ~ 5030374 (-) True CI01000005_05027999_05030374
CI01000005_05613083_05619171.mRNA mRNA upstream 194716 5612913 ~ 5619171 (-) True CI01000005_05613083_05619171
CI01000005_05631288_05682552.mRNA mRNA upstream 211323 5629520 ~ 5682668 (-) True CI01000005_05631288_05682552
CI01000005_05691428_05726724.mRNA mRNA upstream 273231 5691428 ~ 5726724 (-) True CI01000005_05691428_05726724
CI01000005_05769088_05775489.mRNA mRNA upstream 350891 5769088 ~ 5775489 (-) True CI01000005_05769088_05775489
CI01000005_05839780_05888414.mRNA mRNA upstream 420715 5838912 ~ 5888414 (-) True CI01000005_05839780_05888414
TU43542 other downstream 1016884 4381238 ~ 4401110 (-) True G38415
TU43637 other downstream 1211786 4204845 ~ 4206208 (-) True G38510
TU41481 other downstream 3528718 1883254 ~ 1889276 (-) False CI01000005_01883894_01899867
TU41482 other downstream 3528718 1883254 ~ 1889276 (-) True CI01000005_01883894_01899867
TU41601 other downstream 3753715 1663267 ~ 1664279 (-) True G36628
TU44762 other upstream 415595 5833792 ~ 5834392 (-) False G39515
TU44763 other upstream 415595 5833792 ~ 5834539 (-) True G39515
TU45564 other upstream 1062492 6480689 ~ 6483489 (-) True G40190
TU45920 other upstream 1777598 7195795 ~ 7196428 (-) True G40487
TU46013 other upstream 2108024 7526221 ~ 7532148 (-) True G40540

Expression Profile