G39223


Basic Information

Item Value
gene id G39223
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 5529395 ~ 5530410 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU44449
GTGTAGCATGTCTGTACCTTTCATGCCAGCAACACCAGGCCGCCCAGGTAAACCCCGCTGCCCTTGCAGGCCGTTAGAACCAGATAAACCTGGGAATCCTCGAGAGCCATGAGGGCCTGGTGGCCCTGGAGGCCCTGGGGGTCCCACACGTGTGTAGCAGTGCTCACAGCTTCTGTGATGATTGTGCTGGCTACTCAATAGAAGAGCAGGAATCTCAGATCGAAGGATGTCTCTGCAAATCTGTTGAATGTGTTGCTCAGAAAACTCTCTGCCAGGCCGTCCCTCGGGTCCAGGTGGTCCCGGGGGGCCTATTTCTCCGCTCTGTCCTCTGGGCCCTGAGGGTCCCATCTGTCCTCGCTGTCCAGGAAGCCCCTGGTGGCCATTCGAACCACTCTGCCCGGGCTCTCCTGCTGTCCCTTTCTGACATGCACACAAACACAACTCAACACACTCACAGTAGAGCTAATGGTGAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU44449 True 473 lncRNA 0.43 3 5529395 5530410

Neighbor

gene id symbol gene type direction distance location
CI01000005_05229309_05258055 NA coding downstream 269434 5229074 ~ 5259961 (-)
CI01000005_05198676_05204140 NA coding downstream 325231 5198594 ~ 5204164 (-)
CI01000005_05164991_05171380 ZNF451 coding downstream 358015 5164991 ~ 5171380 (-)
CI01000005_05157829_05163163 BAG2 coding downstream 366232 5157713 ~ 5163163 (-)
CI01000005_05027999_05030374 NA coding downstream 499021 5027634 ~ 5030374 (-)
CI01000005_05613083_05619171 NA coding upstream 82503 5612913 ~ 5619171 (-)
CI01000005_05631288_05682552 HCRTR2, FFAR4 coding upstream 99110 5629520 ~ 5682668 (-)
CI01000005_05691428_05726724 FAM83B coding upstream 161018 5691428 ~ 5726724 (-)
CI01000005_05769088_05775489 MLIP coding upstream 238678 5769088 ~ 5775489 (-)
CI01000005_05839780_05888414 LRRC1 coding upstream 308502 5838912 ~ 5888414 (-)
G39201 NA non-coding downstream 32726 5484987 ~ 5496669 (-)
G39126 NA non-coding downstream 78376 5450689 ~ 5451019 (-)
G39125 NA non-coding downstream 79937 5449183 ~ 5449458 (-)
G39124 NA non-coding downstream 80685 5448393 ~ 5448710 (-)
G39119 NA non-coding downstream 111198 5417994 ~ 5418197 (-)
G39224 NA non-coding upstream 2553 5532963 ~ 5533238 (-)
G39235 NA non-coding upstream 20622 5551032 ~ 5551633 (-)
G39240 NA non-coding upstream 38588 5568998 ~ 5569348 (-)
G39246 NA non-coding upstream 44343 5574753 ~ 5575506 (-)
G39434 NA non-coding upstream 80644 5611054 ~ 5611924 (-)
G38415 NA other downstream 1128285 4381238 ~ 4401110 (-)
G38510 NA other downstream 1323187 4204845 ~ 4206208 (-)
CI01000005_01883894_01899867 NA other downstream 3640119 1883222 ~ 1899867 (-)
G36628 NA other downstream 3865116 1663267 ~ 1664279 (-)
G36049 NA other downstream 4485723 1021295 ~ 1043672 (-)
G39515 NA other upstream 303382 5833792 ~ 5834539 (-)
CI01000005_06481721_06483251 NA other upstream 950279 6481355 ~ 6483265 (-)
G40487 NA other upstream 1665385 7195795 ~ 7196428 (-)
G40540 NA other upstream 1995811 7526221 ~ 7532148 (-)

Expression


Co-expression Network