RNA id: CI01000005_05613083_05619171.mRNA


Basic Information

Item Value
RNA id CI01000005_05613083_05619171.mRNA
length 1157
RNA type mRNA
GC content 0.43
exon number 5
gene id CI01000005_05613083_05619171
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 5612913 ~ 5619171 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGTGCAACGCATACCAATGCAACCCCAGCCAGTGCAGACAGGCAATGAGGCAGTTCTACTCGGCTCTTCCTCACAATGTGGCTGAGAGACTGGTGTTCTGTGACTGTGACGGAGAAGACCACGAATGCCAGGAGATGAAGGCCTCTCTACACTCTGGATCCTGTGTGAACGACCAGTCGCAGACACCCTGGACCTGCCTGGAGGCGCTGGACAGCTGCTCTGAGGATGCATTGTGCAGGCAGATATTTAACAGGTACCTGTCCAAATGTTTTGAGGCAGAGGACTCTGCATATGATTTGACGAGTGACTGGCTAAATCTTCTAAACCCTGACAACTTTCTTGGGGAAGACCTTCAATGCAGGGTGGCATTTGTGGAAACTATGGGTTCAGTACTTCATCACCCCTGTACTTGTGATGGATTACATCACCATGACCAATATAAGTGCAATGAGCTGAAACAGATTTTCCAAGACAAGTCCCTCTTCAAGCTCTCAAGAACCAAAGGAAATTTCCGACATGGAGAATCCCATGAATCAAACATTGGGCGACAACCAACCAATACACCAAATGCTGATCTGCAGTGGTTAGGTGGTGAAACTGTCCGACGTGGACAATCCGATGATTCAAGCAATGGGCAACAACAAACCAATGAATCAAGGTTTAAGCAGCAGTGGCTGAGTGATCAACTGTTGTACCTACTGATCTATATCTCTGCATTAATGGTGGTGGTGTTATTCATTGTCAGCCTTGTTTTGCTCAGACTGAGCCCATCTGATATTCATCAGGGAACATCAGTCTGTCCTGTCTCCATTCCTGCCGACACTCAACACCTCCATCCAGATGTTTTTAAGTCTAATGATGTGTTTCCTGAACCCCAGTGTCAGGACCACACTAAATCACCATTAGAAACTTCACCACAGACATTAATGAGACGTTTCACCAAAGTCGGTGTCTTACCCCTTAAACTTTTATCACAGAGGCTTTAACAGTGTTGAAGATGAACATGCTTTTTCATAAACTCACTTATATTGATGTATATTTAACAATATGTAGATTGCATCTATTATACTTAGTATTTTATTACAAAAACACATTGTGTATATTTCATTGGACATTCTTTTGTAACATTTTACCTCAAGCCTGTATGCTTTATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44674 lncRNA downstream 989 5611054 ~ 5611924 (-) True G39434
TU44474 lncRNA downstream 37407 5574753 ~ 5575506 (-) True G39246
TU44468 lncRNA downstream 43565 5568998 ~ 5569348 (-) True G39240
TU44462 lncRNA downstream 61280 5551032 ~ 5551633 (-) True G39235
TU44450 lncRNA downstream 79675 5532963 ~ 5533238 (-) True G39224
TU44761 lncRNA upstream 214621 5833792 ~ 5834201 (-) False G39515
TU44697 lncRNA upstream 331635 5950806 ~ 5959446 (-) True G39452
TU44786 lncRNA upstream 375182 5994353 ~ 5994603 (-) True G39538
TU44701 lncRNA upstream 378899 5998070 ~ 5999081 (-) True G39456
TU44795 lncRNA upstream 438623 6057794 ~ 6059279 (-) True G39547
CI01000005_05229309_05258055.mRNA mRNA downstream 352952 5229169 ~ 5259961 (-) False CI01000005_05229309_05258055
CI01000005_05198676_05204140.mRNA mRNA downstream 408749 5198594 ~ 5204164 (-) True CI01000005_05198676_05204140
CI01000005_05164991_05171380.mRNA mRNA downstream 441533 5164991 ~ 5171380 (-) True CI01000005_05164991_05171380
CI01000005_05157829_05163163.mRNA mRNA downstream 449750 5157713 ~ 5163163 (-) True CI01000005_05157829_05163163
CI01000005_05027999_05030374.mRNA mRNA downstream 582539 5027634 ~ 5030374 (-) True CI01000005_05027999_05030374
CI01000005_05631288_05682552.mRNA mRNA upstream 10349 5629520 ~ 5682668 (-) True CI01000005_05631288_05682552
CI01000005_05691428_05726724.mRNA mRNA upstream 72257 5691428 ~ 5726724 (-) True CI01000005_05691428_05726724
CI01000005_05769088_05775489.mRNA mRNA upstream 149917 5769088 ~ 5775489 (-) True CI01000005_05769088_05775489
CI01000005_05839780_05888414.mRNA mRNA upstream 219741 5838912 ~ 5888414 (-) True CI01000005_05839780_05888414
CI01000005_05894901_05905611.mRNA mRNA upstream 275299 5894470 ~ 5906075 (-) True CI01000005_05894901_05905611
TU43542 other downstream 1211803 4381238 ~ 4401110 (-) True G38415
TU43637 other downstream 1406705 4204845 ~ 4206208 (-) True G38510
TU41481 other downstream 3723637 1883254 ~ 1889276 (-) False CI01000005_01883894_01899867
TU41482 other downstream 3723637 1883254 ~ 1889276 (-) True CI01000005_01883894_01899867
TU41601 other downstream 3948634 1663267 ~ 1664279 (-) True G36628
TU44762 other upstream 214621 5833792 ~ 5834392 (-) False G39515
TU44763 other upstream 214621 5833792 ~ 5834539 (-) True G39515
TU45564 other upstream 861518 6480689 ~ 6483489 (-) True G40190
TU45920 other upstream 1576624 7195795 ~ 7196428 (-) True G40487
TU46013 other upstream 1907050 7526221 ~ 7532148 (-) True G40540

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012361 False 1964 mRNA 0.40 7 NC_007124.7 1990970 ~ 2010259 (-)