RNA id: CI01000005_04401277_04428207.mRNA


Basic Information

Item Value
RNA id CI01000005_04401277_04428207.mRNA
length 2517
RNA type mRNA
GC content 0.45
exon number 21
gene id CI01000005_04401277_04428207
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 4401248 ~ 4428207 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCGGGCTTGAAAGCCATGGCCGAACCGATACATGCTTTGTGCAATGAGCTTATAAAGGCCGTGAATGTGATGATGGAGGCAGAATCCAGTCAGACATACCGCCTGGAGGCCCTTAAGTTTATTGAAGATTTCAAAGAGAAAAGTCCTTTCTGCATTGAATGTGGTCTTCAGTTAGCGGAGAAATCCCAGACTGCAGTGGTCAGACACTTTGGGCTGCAGATACTGGAGCATGTAGTCAAGTTTCGGTGGAATAACATGGCTCCGCAAGAAAAGCTCCGTCTGAAGAACTGCACTATGGGCCTGTTGTCACATGGTACACATCCAATTCTGCAACAGGAATGTCATGTTAAGGATGCGCTCTCACGCATAGTAGTTGAGATGATCAAGAGAGAGTGGCCGCAGCACTGGCCTGACATGCTGAAGGAGATGGAGGCCCTGACTGCTATGGGGGATGCTCAGACAGAACTTGTAATGCTTGTACTGCTGCGGTTAGCTGAGGATGTGATGACATTTCAGACATTACCCACTCAAAGACAGCGAGAAGTCCAGCACGCCCTCGAGGAGAATATGGGCAGCATCTTCACCTTCCTGCGTGGCATTTTAATTATGCAGCTTCATGTGAATGAGTACAACAAGTTGAAATGTGTTGCTGGTCTGGAATTGAAGACAAAAGCTCACTGGCGAGTTGGTGTGACCACTCTCAACACTCTGGCTGGCTACATCGATTGGGTTGATCTGAACCACATCACCAATGAAAACTGCCGTCTTTTGGAGATCTTGTGCCTGTTGCTGAGCGAACCTGAGCTTCAGTTGGAGGCTGCAGAGTGTCTGCTAATTGCCATTAGTAGGAAAGGAGAGTTAGAAGAGAGGAAGCCATTTTTGATGCTCTTTGATGAAGTCATCATGAACTACATCCTGTCTGCTGCACAATCATCAGGTGCCATTGTGGAAAGAAGATACACATTTTTGAAGAGGCTGTGTCAGGTTCTCTGTGCCCTGGGTAGCCAAATCTGCTCTCTAGTGTTTCTGAGGTCGTCCACGCAAATGACCTGGGGAAACCTATTCCGACATGAAATTATATCGTGGGATCCTGTAATTGGCCAAATGGCCATAAAATATTTAAGAGCGGCAAGGATCAATCTTGTGAAAGCTGGATTTCCCTCCAAGAATGATTGTCCAGGTTGTGAATTCTCCAGAGTGGACTTTGATAGTGATGAAGATTTCAACTGCTTCTTTAAGTCTTTCAGGGCTCAGCAGGGGGAAGCAGTTCGTCTGGCTTGTAAAATTGTCCCGTTTGAGACCTTTCAAATTGCAAGGGAGTGGGTGCAGTATCAGATCAACACACCTATAGATACTGGGAATTCAACATCGGTTCAGTGGGATGCCATGACTTTCTTCACTGAAAGTGTATTTGGACAGCTCTTCAAAATCCTTGACAAAGAGGCAAGACCAACCAATTTCTGTCATGGTGCAGCAAAACTTCCCATGGATGAGGGCATGGAGCTGCTGCAGATGGTTGTAAACTATGAGACTAGAGATCCTCTCATTCTGTCCTGTGTTCTTACCATCATATCCACTTTCTTTCCCTTTGTCAAACACCAACCTCACTTCCTGCCTCAAGTACTCTCTAAGATATTTACTGCCACCACATTTGAATTGGTTGATGAACGCAAGGCACCTCGAACGCACCCTCTTAAGAACGTCAGAAGACATGCCTGTTCCTCCATCATTAGGATGTGTCGAGATTATTCAGACTTTATTCTGCCGTGCTTTGACATGATGTATGAGCATGTGAAGAGCTTGTTCTCCAATAAGAAGCTGCTGACACCGATGGAGAAAAGTTCTCTTATGGAAGCCCTGATACTGATCAGCAATCAGTTTAAAGACTATAACAAGCAGAAAGCCTTCCTGGAGGAACTCATGGCACCTGTTACTGCACAGTGGCTGTCAGAGGAGATGAGGAGCGTTTTATGGGATCCTGCTACCTTCTTGGCGTATGTTGGTGCTGACCATTACTCTGAAACTGGCAGTGCATTTGTTTATTTGCCAGCAACCTGTCAAAATATTAGTTTTTGTGTGTACACCATGCTTGGGGTTGTGAAGCATGCTCGTTGGCCCGCTGATCCTGAGGAGGCAAAAGCAGGCGGATTTATGATCAGCACTAACTCTGATGGGACCCCCGTCTACAGAAACCCTTGTGCAGAGCCCCTGCAGGCCCTGCTGCCCAACCTTTTGGCCCTCATCAGGACCCACAACAGCTTGTTCTTGCCAGAGAACGTCAAACTTCTTAGCAAGACCTTTACTAGAGTCTATGATGATATGGATATGGAGGAAAATTCTGTTTTAGGAATTTCTCAACCAGTTTTAGATTCCTACGACTCTACAGTGTACAAAAACATTGTTGAGCGAGGCTTCTTCACCGCACTCTACAGAAACTGGTTGGAACAATCAAGTTCAATGATTGATTTTTCTTTATTGTTTGTTTAATAGAATATTTCTTTTCCAATAACAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43664 lncRNA downstream 33241 4366516 ~ 4368007 (-) True G38537
TU43657 lncRNA downstream 92074 4308961 ~ 4309174 (-) True G38530
TU43534 lncRNA downstream 101438 4296209 ~ 4299810 (-) True CI01000005_04296779_04299727
TU43644 lncRNA downstream 172683 4226726 ~ 4228565 (-) True G38517
TU43639 lncRNA downstream 185710 4215272 ~ 4215538 (-) True G38512
TU43871 lncRNA upstream 113695 4541902 ~ 4542173 (-) True G38719
TU43873 lncRNA upstream 115130 4543337 ~ 4543809 (-) True G38721
TU43883 lncRNA upstream 119589 4547796 ~ 4548225 (-) True G38724
TU43884 lncRNA upstream 120394 4548601 ~ 4548844 (-) True G38725
TU43888 lncRNA upstream 123558 4551765 ~ 4552030 (-) True G38729
CI01000005_04332499_04357527.mRNA mRNA downstream 42391 4332490 ~ 4358857 (-) True CI01000005_04332499_04357527
CI01000005_04296779_04299727.mRNA mRNA downstream 101463 4296638 ~ 4299785 (-) False CI01000005_04296779_04299727
CI01000005_04161239_04162612.mRNA mRNA downstream 238002 4160972 ~ 4163246 (-) True CI01000005_04161239_04162612
CI01000005_03986570_03989555.mRNA mRNA downstream 411693 3986099 ~ 3989555 (-) True CI01000005_03986570_03989555
CI01000005_03714714_03715575.mRNA mRNA downstream 685607 3714273 ~ 3715641 (-) True CI01000005_03714714_03715575
CI01000005_04443111_04445092.mRNA mRNA upstream 14846 4443053 ~ 4445092 (-) True CI01000005_04443111_04445092
CI01000005_04624198_04638644.mRNA mRNA upstream 195789 4623996 ~ 4638644 (-) True CI01000005_04624198_04638644
CI01000005_04731666_04732248.mRNA mRNA upstream 303381 4731588 ~ 4732248 (-) True CI01000005_04731666_04732248
CI01000005_04738995_04739378.mRNA mRNA upstream 310412 4738619 ~ 4739378 (-) True CI01000005_04738995_04739378
CI01000005_04751377_04754904.mRNA mRNA upstream 322290 4750497 ~ 4754904 (-) True CI01000005_04751377_04754904
TU43542 other downstream 138 4381238 ~ 4401110 (-) True G38415
TU43637 other downstream 195040 4204845 ~ 4206208 (-) True G38510
TU41481 other downstream 2511972 1883254 ~ 1889276 (-) False CI01000005_01883894_01899867
TU41482 other downstream 2511972 1883254 ~ 1889276 (-) True CI01000005_01883894_01899867
TU41598 other downstream 2736969 1663267 ~ 1664279 (-) False G36628
TU44762 other upstream 1405585 5833792 ~ 5834392 (-) False G39515
TU44763 other upstream 1405585 5833792 ~ 5834539 (-) True G39515
TU45564 other upstream 2052482 6480689 ~ 6483489 (-) True G40190
TU45920 other upstream 2767588 7195795 ~ 7196428 (-) True G40487
TU46013 other upstream 3098014 7526221 ~ 7532148 (-) True G40540

Expression Profile