RNA id: TU43884


Basic Information

Item Value
RNA id TU43884
length 215
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G38725
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 4548601 ~ 4548844 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGCGCCGTCTCTTCCAAAGTTTTAGTCATCTGAGGTCTTCTTAAGAGGCTGGATCCAAACTGAAACTGATGTACTCTCTAGTCAGAAAAGCAAATGGAGAATAATTAGCATAGCTGCTGTTCATAACATTAAGCAAAGATAGTCATGTGCAATTGATCTGATATGAGATGGATTATGTGAATGCTTGGCTAAAGAGATGTGTCTTTAATCTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43883 lncRNA downstream 376 4547796 ~ 4548225 (-) True G38724
TU43873 lncRNA downstream 4792 4543337 ~ 4543809 (-) True G38721
TU43871 lncRNA downstream 6428 4541902 ~ 4542173 (-) True G38719
TU43664 lncRNA downstream 180594 4366516 ~ 4368007 (-) True G38537
TU43657 lncRNA downstream 239427 4308961 ~ 4309174 (-) True G38530
TU43888 lncRNA upstream 2921 4551765 ~ 4552030 (-) True G38729
TU43917 lncRNA upstream 108974 4657818 ~ 4668634 (-) True G38756
TU43921 lncRNA upstream 149583 4698427 ~ 4705877 (-) True G38760
TU43863 lncRNA upstream 263789 4812633 ~ 4815375 (-) True G38711
TU43855 lncRNA upstream 298081 4846925 ~ 4856307 (-) False G38706
CI01000005_04443111_04445092.mRNA mRNA downstream 103509 4443053 ~ 4445092 (-) True CI01000005_04443111_04445092
CI01000005_04401277_04428207.mRNA mRNA downstream 120394 4401248 ~ 4428207 (-) True CI01000005_04401277_04428207
CI01000005_04332499_04357527.mRNA mRNA downstream 189744 4332490 ~ 4358857 (-) True CI01000005_04332499_04357527
CI01000005_04296779_04299727.mRNA mRNA downstream 248816 4296638 ~ 4299785 (-) False CI01000005_04296779_04299727
CI01000005_04161239_04162612.mRNA mRNA downstream 385355 4160972 ~ 4163246 (-) True CI01000005_04161239_04162612
CI01000005_04624198_04638644.mRNA mRNA upstream 75152 4623996 ~ 4638644 (-) True CI01000005_04624198_04638644
CI01000005_04731666_04732248.mRNA mRNA upstream 182744 4731588 ~ 4732248 (-) True CI01000005_04731666_04732248
CI01000005_04738995_04739378.mRNA mRNA upstream 189775 4738619 ~ 4739378 (-) True CI01000005_04738995_04739378
CI01000005_04751377_04754904.mRNA mRNA upstream 201653 4750497 ~ 4754904 (-) True CI01000005_04751377_04754904
CI01000005_04758130_04802713.mRNA mRNA upstream 209223 4758067 ~ 4802713 (-) True CI01000005_04758130_04802713
TU43542 other downstream 147491 4381238 ~ 4401110 (-) True G38415
TU43637 other downstream 342393 4204845 ~ 4206208 (-) True G38510
TU41481 other downstream 2659325 1883254 ~ 1889276 (-) False CI01000005_01883894_01899867
TU41482 other downstream 2659325 1883254 ~ 1889276 (-) True CI01000005_01883894_01899867
TU41601 other downstream 2884322 1663267 ~ 1664279 (-) True G36628
TU44762 other upstream 1284948 5833792 ~ 5834392 (-) False G39515
TU44763 other upstream 1284948 5833792 ~ 5834539 (-) True G39515
TU45564 other upstream 1931845 6480689 ~ 6483489 (-) True G40190
TU45920 other upstream 2646951 7195795 ~ 7196428 (-) True G40487
TU46013 other upstream 2977377 7526221 ~ 7532148 (-) True G40540

Expression Profile