RNA id: CI01000005_04731666_04732248.mRNA


Basic Information

Item Value
RNA id CI01000005_04731666_04732248.mRNA
length 502
RNA type mRNA
GC content 0.50
exon number 2
gene id CI01000005_04731666_04732248
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 4731588 ~ 4732248 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATGCTAGTCGTTCGAAACATCCTCCTTCTCTTATTCTGTTTAGTTGTTCTACTAGTATTTGCTCAAAGCTCTTTTCTTCCACCATGTGAGCCGGTTAATGAGACTGTCGCGGTGGAAAAAGAGGGCTGTCCAAAATGTCTGGTGTTTCAGACCACCATCTGCAGTGGCCACTGCCTAACAAAGGAGCCTGTATACAAGAGCCCATTTTCCACTGTCTACCAACACGTGTGCACTTACCGGGACGTCCGCTATGAGACGGTCCGCTTGCCAGACTGTCCCCCCGGGGTGGACCCCCATATCACCTACCCGGTGGCTCTCAGCTGCGACTGCAGCCTCTGCACCATGGACACGTCCGACTGTACCATCGAAAGCCTGCAGCCTGATTTCTGCATGTCTCAGAGAGAGGATTTCCCTGTGTACTAGCCTGTCATCAAACCACAGAGTACGCAAACTCTGCCCACTCTAAATCAGATAAATGTCACATAGATGTATATCAATAAA

Function

GO:

id name namespace
GO:0005179 hormone activity molecular_function

KEGG:

id description
K08521 LHB; lutropin subunit beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43921 lncRNA downstream 25711 4698427 ~ 4705877 (-) True G38760
TU43917 lncRNA downstream 62954 4657818 ~ 4668634 (-) True G38756
TU43888 lncRNA downstream 179558 4551765 ~ 4552030 (-) True G38729
TU43884 lncRNA downstream 182744 4548601 ~ 4548844 (-) True G38725
TU43883 lncRNA downstream 183363 4547796 ~ 4548225 (-) True G38724
TU43863 lncRNA upstream 80385 4812633 ~ 4815375 (-) True G38711
TU43855 lncRNA upstream 114677 4846925 ~ 4856307 (-) False G38706
TU43857 lncRNA upstream 114677 4846925 ~ 4850392 (-) False G38706
TU43854 lncRNA upstream 122535 4854783 ~ 4895140 (-) True G38706
TU43977 lncRNA upstream 209089 4941337 ~ 4941717 (-) True G38813
CI01000005_04624198_04638644.mRNA mRNA downstream 92944 4623996 ~ 4638644 (-) True CI01000005_04624198_04638644
CI01000005_04443111_04445092.mRNA mRNA downstream 286496 4443053 ~ 4445092 (-) True CI01000005_04443111_04445092
CI01000005_04401277_04428207.mRNA mRNA downstream 303381 4401248 ~ 4428207 (-) True CI01000005_04401277_04428207
CI01000005_04332499_04357527.mRNA mRNA downstream 372731 4332490 ~ 4358857 (-) True CI01000005_04332499_04357527
CI01000005_04296779_04299727.mRNA mRNA downstream 431803 4296638 ~ 4299785 (-) False CI01000005_04296779_04299727
CI01000005_04738995_04739378.mRNA mRNA upstream 6371 4738619 ~ 4739378 (-) True CI01000005_04738995_04739378
CI01000005_04751377_04754904.mRNA mRNA upstream 18249 4750497 ~ 4754904 (-) True CI01000005_04751377_04754904
CI01000005_04758130_04802713.mRNA mRNA upstream 25819 4758067 ~ 4802713 (-) True CI01000005_04758130_04802713
CI01000005_04829696_04837047.mRNA mRNA upstream 97350 4829598 ~ 4837232 (-) True CI01000005_04829696_04837047
CI01000005_04883863_04894229.mRNA mRNA upstream 150036 4882284 ~ 4894229 (-) True CI01000005_04883863_04894229
TU43542 other downstream 330478 4381238 ~ 4401110 (-) True G38415
TU43637 other downstream 525380 4204845 ~ 4206208 (-) True G38510
TU41481 other downstream 2842312 1883254 ~ 1889276 (-) False CI01000005_01883894_01899867
TU41482 other downstream 2842312 1883254 ~ 1889276 (-) True CI01000005_01883894_01899867
TU41601 other downstream 3067309 1663267 ~ 1664279 (-) True G36628
TU44762 other upstream 1101544 5833792 ~ 5834392 (-) False G39515
TU44763 other upstream 1101544 5833792 ~ 5834539 (-) True G39515
TU45564 other upstream 1748441 6480689 ~ 6483489 (-) True G40190
TU45920 other upstream 2463547 7195795 ~ 7196428 (-) True G40487
TU46013 other upstream 2793973 7526221 ~ 7532148 (-) True G40540

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011331 True 1378 mRNA 0.41 3 NC_007124.7 2523032 ~ 2526033 (+)