RNA id: CI01000005_06772433_06793278.mRNA


Basic Information

Item Value
RNA id CI01000005_06772433_06793278.mRNA
length 2554
RNA type mRNA
GC content 0.53
exon number 23
gene id CI01000005_06772433_06793278
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 6772433 ~ 6793278 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAAGAACCGCAGCGCTTATAATATAGACCCGAGACTCAAACACAGAGTCCATCAGTACCTGAAAACACACAATGATCCGTATGTGGACATTTCAGCCATGGCCTCTGAGCTTCAGCAGCAGTTCAGGATTGAGTACGGCCGGAGGAACAGGACAGCCTTCAGGATTCAAGTGGAAAAAGTTCATGCAGCCATATGCAGTGAGTCTGACATCTCTCTTCTGGAAAACAAACATCTGGCCAAAAGAGCGAGACGCAGCCGAGAGGACGGGGACAACAGTCACGTCACCGAATACAGCACTGACAGTGAGGACGATATTCCTGAACATGAACACACAAATCACATGAACAGCTCGCTGACGTCGCTCTACCAGAGAGGAGCGTCTCACGCGGCCGGCGGCTCGACCCCTCAGAAGAGCGACAGCGACGGCTGGATCATCGATAAGACTGGAAACAAAGGACAGGAGAACATCTGCATTGATCTGTGTGAGGAAGAGTCCACCAGCGCTGCGAAGCAGAGAGATCCATCGAAGGAAAAGAAATCAAAGAGCGGGAAGCAGAGGGGAGTGAAGAAGAGCAAGCATGACGAGGACGCGGAGATCAGTGCTGCAATACTGACGAAAAAGAGTAAGGTCAAGGTCCATGAGCTTCAGTACTCCACTGTGAAGTTTGAGGATTTCGGCGGCAGCGAGGAAACTCTGGAGGAAGTGTGTAAACTGCTGATCCACATGAGACATCCAGAAGTGTACCAGCGGCTGGGAGTCGTTCCTCCGCGAGGATTCCTCTTGCACGGGCCGCCGGGATGTGGGAAGACGCTGCTGGCTCAAGCCGTGGCTGGAGAGACTGGTTTGCCCATGCTGAAGGTCTCAGCGCCGGAGCTGGTGTCTGGAGTCTCTGGAGAATCTGAGCAGAAGCTGCGGGAGCTGTTTGAGCAAGCCATAAGCAGCGCTCCCTGTATCATGTTCATCGATGAGATTGATGCCATCACTCCAAAACGAGAGATCGCCTCCAAAGACATGGAGAGAAGGATCGTTGCTCAGTTACTCACCTGCATGGATGACCTCAATTCGTTATCAGAGCCAGCTCAGGTCTTGGTTATTGGAGCCACTAACCGTCCGGACTCATTGGATCCGGCCCTGCGTCGAGCCGGCAGGTTTGACCGAGAGATCTGTCTGGGGATTCCTGATGAGGGCGCACGACTGAAGATTCTGAAGACACTCTGTCGGAAGATCACACTGCCGGAGGATTTTGACTACAGACAGTTGGCGCGTCTCACACCAGGTTATGTGGGCGCAGATTTAATGGCGCTGTGCCGTGAGGCGGCCATGACAGCCGTCAACAGAATCCTGCTGAAGTCGAGCAGTGAAGACGGCACTCCACCGAAAGGTGAGCTGGAGCAGCTGCTGGCATTGCTAAAGACGAACGAGTCTCTGAACGAGGAGCAGCTTTCTGGACTCTGCGTTGTCATGTCAGACTTCAAGACGTCGTTAGCCAGAGTCCAGCCATCCGCTAAGCGTGAGGGCTTTGCCACCGTACCGGACGTGACCTGGGAAGACGTGGGCGCCCTGCAGGACATCCGCGAGGAGCTCAACATGGCCATCATGGCTCCCATCCATAACCCGGAGCATTTCAAAGCTCTGGGTCTCAATGCCCCAGCTGGAGTGCTGCTCGCCGGACCGCCCGGGTGTGGAAAGACCCTCTTAGCCAAAGCTGTTGCTAATGAGTCTGGCTTGAACTTCATCTCTGTCAAGGGTCCAGAGCTGCTGAATATGTATGTAGGCGAGAGTGAGAGAGCCGTCCGGCAGGTCTTCCAGAGAGGCCGTAACTCAGCGCCGTGTGTCATCTTTTTTGATGAGATTGATGCTCTTTGTCCTCGTCGCTCAGAGCATGAGTCAGGAGCCAGCGTTCGTGTGGTAAACCAGCTGCTCACTGAGATGGACGGCATGGAGAATCGCCGGCAGGTTTTCATGATGGCTGCCACCAACAGACCAGATATTATTGATCCGGCTGTGCTCAGACCGGGACGACTGGACAAAACTCTGTATGTGGGTTTGCCGCCCGCCGCAGACAGACACGCCATATTAGTCACCATTACTAAGGGTGGCACCAAACCACATCTAGACTCTGATGTCAGTCTTGAGGAAATTGCCCATGATGCACGTTGTGAAAGTTTTACAGGTGCAGATCTGTCGGCGCTGGTGCGAGAGGCGAGTGTTAACGCTCTGAGAGTTCACCTGAATGCAGGACCAGCGCAAACACACACAGAGCCAGTGAAGGACATCAGAGTGAGCCGGGTTCACTTCGAGGAGGCCTTCAAGAAGGTGCGACCGTCTGTGTCCAAGAAGGCAATGCTTCAGTCAGTACTCTCCACTCTAGCAGCATCTAATGGCTGGAATGAGACTGCCCTCTTTACCATCTTTCAACTAGTTTTAAACCCTGAAGTGCATCAGCAGATGGTCATTTATGATGATGTCATCTGCTTGGAGAAGAGCGTCGAAGAAGAATTCTCAATCAGTTATGCCTGCATTGTGTCCCATCCGACCACCACGCCCAACG

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG:

id description
K14571 RIX7, NVL; ribosome biogenesis ATPase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45735 lncRNA downstream 18416 6753816 ~ 6754017 (-) True G40349
TU45695 lncRNA downstream 91184 6680036 ~ 6681249 (-) True G40316
TU45692 lncRNA downstream 120515 6651688 ~ 6651918 (-) True G40313
TU45689 lncRNA downstream 124065 6648152 ~ 6648368 (-) True G40310
TU45605 lncRNA downstream 231047 6538833 ~ 6539939 (-) True G40231
TU45770 lncRNA upstream 145149 6938427 ~ 6938654 (-) True G40378
TU45771 lncRNA upstream 145813 6939091 ~ 6939294 (-) True G40379
TU45775 lncRNA upstream 149833 6943111 ~ 6945572 (-) True G40382
TU45812 lncRNA upstream 200039 6993317 ~ 7090894 (-) True G40403
TU45818 lncRNA upstream 204304 6997582 ~ 6998343 (-) False G40407
CI01000005_06765592_06772165.mRNA mRNA downstream 268 6765273 ~ 6772165 (-) True CI01000005_06765592_06772165
CI01000005_06721142_06724797.mRNA mRNA downstream 47600 6720908 ~ 6724833 (-) True CI01000005_06721142_06724797
CI01000005_06655061_06664135.mRNA mRNA downstream 108093 6654881 ~ 6664340 (-) True CI01000005_06655061_06664135
CI01000005_06623484_06646729.mRNA mRNA downstream 125704 6623344 ~ 6646729 (-) True CI01000005_06623484_06646729
CI01000005_06609686_06619218.mRNA mRNA downstream 153215 6609642 ~ 6619218 (-) True CI01000005_06609686_06619218
CI01000005_06815976_06894322.mRNA mRNA upstream 22100 6815378 ~ 6894585 (-) True CI01000005_06815976_06894322
CI01000005_07018058_07025374.mRNA mRNA upstream 223563 7016841 ~ 7025374 (-) True CI01000005_07018058_07025374
CI01000005_07035672_07037203.mRNA mRNA upstream 241499 7034777 ~ 7037276 (-) True CI01000005_07035672_07037203
CI01000005_07052874_07068345.mRNA mRNA upstream 259452 7052730 ~ 7068377 (-) True CI01000005_07052874_07068345
CI01000005_07093538_07094533.mRNA mRNA upstream 300204 7093482 ~ 7094569 (-) True CI01000005_07093538_07094533
TU45564 other downstream 288944 6480689 ~ 6483489 (-) True G40190
TU44763 other downstream 937894 5833792 ~ 5834539 (-) True G39515
TU44762 other downstream 938041 5833792 ~ 5834392 (-) False G39515
TU43542 other downstream 2371323 4381238 ~ 4401110 (-) True G38415
TU43637 other downstream 2566225 4204845 ~ 4206208 (-) True G38510
TU45920 other upstream 402517 7195795 ~ 7196428 (-) True G40487
TU46013 other upstream 732943 7526221 ~ 7532148 (-) True G40540

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012337 False 2663 mRNA 0.55 23 NC_007124.7 516258 ~ 533243 (-)