RNA id: CI01000005_06609686_06619218.mRNA


Basic Information

Item Value
RNA id CI01000005_06609686_06619218.mRNA
length 1262
RNA type mRNA
GC content 0.55
exon number 9
gene id CI01000005_06609686_06619218
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 6609642 ~ 6619218 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGTGCTCCCGGTGCTCCGGCTGGTCGTGTCGTGTCGCTGTCAAACTGCGTGGAGGAACCTGCAGCAGATACAACGAACCCCTTTGAGACAATGGCTGCTGAAGAGAAGACAGACCACAGTGACCACAGAAAGTGGAAGTGCGTCAGCCAGATCCGTGTCGATTCCCAACGCAGCGACGGATCGTGTGATTGGCCGCTGGCTGCTGGGCTGCAGTGGGCTGGTTCTCGGCGCTGTGGTGCTGGGAGGAGTTACGAGATTGACGGAGTCCGGTCTGTCGATGGTTGACTGGCATTTAGTGAAAGAGATGAAGCCGCCACAGACTCAAGCGGAGTGGGAAGAGGAGTTCTCCAAGTACCAACAGTTCCCAGAGTTCAAAATCATGAATCACGACATGACTCTGAACGAGTTTAAGTTCATCTTTTACATGGAGTGGGGTCACCGCATGTGGGGCCGGCTGGTGGGATTAGCGTACATTCTTCCTGCGGTGTATTTCTGGAGAAGAAGATACTTCAGCCGCTCCATGAAGGCTCGTGTTTTGGGTCTTTGTGGCTTTGTCGTCTTCCAGGGTCTTCTGGGCTGGTACATGGTGAAGAGCGGCCTGGAGGAGAAGCCCGAGTCGTATGATGTTCCCCGTGTCAGTCAGTACAGACTGGCGGCTCACCTGGGCTCGGCTCTGCTGCTGTACTGCGCCAGTCTCTGGACGGGACTCACGCTCATGCTGCCGGCCACCAAGATTCCTGACAGCAGACATTTACTTCACCTGAGGCGGTTTGCCAAGGTTACAGGCGGTCTGGTCTTCCTCACGGCTCTCTCAGGTGCCTTTGTTGCTGGACTGGACGCAGGTTTGGTTTATAACTCTTTCCCAAAGATGGGCGAGCGCTGGATCCCTGACGATCTTCTGGCTTTTTCCCCAACCATCAAGAATGTGTTTGAAAACCCCACAACGGTTCAGTTTGACCACCGCATTCTGGGCATCGGCTCACTGACGGCCATCACAGGACTCTACCTGTTCTCCAGACGCGTCCTCCTGCCCCGCAGAGCAAAGATCGCGATCGGCTGTCTCACCGCCATGGCCTATACACAAGTGGTTCTGGGCATCAGCACCCTGCTTCTGTACGTTCCCACACCGCTGGCAGCGACGCATCAGTCCGGATCCGTGGCGCTGCTTACCTTCGCCATCTGGGTCCTGGCGGAGCTGCGGAAGGTGGTCAAGTAGATTGAGCTCAGATCCCATGATATAAGAAGGTATTTATTAATAAA

Function

GO:

id name namespace
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG:

id description
K02259 COX15, ctaA; heme a synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45602 lncRNA downstream 54699 6508611 ~ 6554943 (-) True G40228
TU45605 lncRNA downstream 68256 6538833 ~ 6539939 (-) True G40231
TU45558 lncRNA downstream 132765 6398299 ~ 6476877 (-) False G40188
TU45689 lncRNA upstream 28934 6648152 ~ 6648368 (-) True G40310
TU45692 lncRNA upstream 32470 6651688 ~ 6651918 (-) True G40313
TU45695 lncRNA upstream 60818 6680036 ~ 6681249 (-) True G40316
TU45735 lncRNA upstream 134598 6753816 ~ 6754017 (-) True G40349
TU45770 lncRNA upstream 319209 6938427 ~ 6938654 (-) True G40378
CI01000005_06567196_06595338.mRNA mRNA downstream 12203 6566909 ~ 6597439 (-) True CI01000005_06567196_06595338
CI01000005_06518032_06559301.mRNA mRNA downstream 50206 6518032 ~ 6559436 (-) False CI01000005_06518032_06559301
CI01000005_06507647_06517258.mRNA mRNA downstream 92076 6507157 ~ 6517566 (-) True CI01000005_06507647_06517258
CI01000005_06481721_06483251.mRNA mRNA downstream 126391 6481355 ~ 6483251 (-) False CI01000005_06481721_06483251
CI01000005_06458571_06470774.mRNA mRNA downstream 138715 6458485 ~ 6470927 (-) True CI01000005_06458571_06470774
CI01000005_06623484_06646729.mRNA mRNA upstream 4126 6623344 ~ 6646729 (-) True CI01000005_06623484_06646729
CI01000005_06655061_06664135.mRNA mRNA upstream 35663 6654881 ~ 6664340 (-) True CI01000005_06655061_06664135
CI01000005_06721142_06724797.mRNA mRNA upstream 101690 6720908 ~ 6724833 (-) True CI01000005_06721142_06724797
CI01000005_06765592_06772165.mRNA mRNA upstream 146055 6765273 ~ 6772165 (-) True CI01000005_06765592_06772165
CI01000005_06772433_06793278.mRNA mRNA upstream 153215 6772433 ~ 6793278 (-) True CI01000005_06772433_06793278
TU45564 other downstream 126153 6480689 ~ 6483489 (-) True G40190
TU44763 other downstream 775103 5833792 ~ 5834539 (-) True G39515
TU44762 other downstream 775250 5833792 ~ 5834392 (-) False G39515
TU43542 other downstream 2208532 4381238 ~ 4401110 (-) True G38415
TU43637 other downstream 2403434 4204845 ~ 4206208 (-) True G38510
TU45920 other upstream 576577 7195795 ~ 7196428 (-) True G40487
TU46013 other upstream 907003 7526221 ~ 7532148 (-) True G40540

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011284 True 1583 mRNA 0.52 9 NC_007124.7 713941 ~ 724385 (+)