CI01000005_06458571_06470774


Basic Information

Item Value
gene id CI01000005_06458571_06470774
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 6458485 ~ 6470927 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_06458571_06470774.mRNA
AGAAACACCTGGAGCTGGAGTAATTGACACCTTTGCAAGACAAATAATTTAATTGTGAATTATGAATTCTACTAAATATCTTATAGGCTAAATGACACACAGCAGCCTTATATGTTTTACAGAAGTATGAACTCTACATAATGGAGGGAGAAAATGAATGAAGAACATGATGGAGAAAACAGCCAACAGAAACATGGCAGACTGCAGATGACTTTACCTTTGAGATCGCTGATTCTAGAGAAAATAGAGGGAGGCGCTGCCTCTAAAATCAGTCTCCATGAGGAGAGAGTGGATCAGACACAGACGGCATCATCTGCAGTGTACAGCTGTGTGTCTTTGAAGAGTAACGACTCTATGAGGGAACCTCCTGTATTGAGTGATGGATCACTGATCTCCGACACCAAAGTTGAAAGAGATGGTCTGACCAGATCTGTGAACTCATGTCAGACCCACATCACACAGCAGGGCACACAAGTAACCCTGCAGAAGGAGACTGGAGACCTGCAGAAACTAGCAGATGATGAACTACAGAGAGTCAAAGACCAACACAAAACCAGCATGAAGAACAAGTATGAGAGATTATTTGAGGGAAACAAACTACATGGGAACCAAACCTTCCTGAACAGGATCTACACACAGCTCTACATCCTAGAGGGAGAGAGAGAAGGAGTGAATGAAGAACATGAGGTTTTACAGATGGAGAAAACAGCCAGAACACAACACTCACAAGACATTCCAATCTACTGCAATGACATCTTTAAAGCCTCACCTGAACCAGAATATGAGAAGAAATACCAAATCAAGACTGTTCTTACTAAAGGCATTGCAGGAATCGGAAAAACTGTCTCTGTGCAGAAGTTCATTCTGGACTGGGCTGAGGGAAAAGCCAATCAGGATGTAGATTTCATGTTTGTGCTTACATTTCGAGAGCTGAACTTGATCCGAGATCATCAGTACAGTCTTCACAGACTTCTGCTGGACTTTCATCCTGAACTTCAAGATATGGACTCAAAGATTTATGAGAAGAGCAAAGTTGTGTTCATCTTTGATGGTCTGGATGAAAGCAGAATCACACTGATGTTTTCAGATGCTCAGAAAGTTTTTGATGTGACTGAGACTACATCAGTGGCTATACTGATGTCAAACCTCATTAAAGGAGAGCTGCTTCCCTCTGCTCTCATCTGGATCACCTCCAGACCAGCAGCAGGCAATCAGATCCCCCGAATATTCATCAACCGTCTGACAGAAATTCAGGGATTCAGTGAACCACAGAAGGAGGATTATTTCAAGAAGAGAATCAGTGACGAGCATCAAGCTAGCAGAATCATCTCACACATCAGAAAAGCAAGAAGCCTCCACATCATGTGCCACATACCTGTCTTCTGCTGGATCTCATCCACTGTGCTTCAGAAGCTCCTGATAGAAGATCTGAGTGCAGAAATCCCTCAAACTCTGACTGAAATGTACATTCACTTCCTGCTGATTCAGATCAACATGAGGAATCAGAAGTACGAAGAGAGAGATCCAGAGAAAGTCCTGCAGTCCAACAGAGAAGTGATTGTGAAACTTGCTGAAGTGGCTTTCAAACAGCTTATGAAGAGCAATGTGATGTTCTATGAGGAGGACCTGAGAGAGAGTGGCATAGACATTACAGATGCCGCAGTGTATTCTGGGATTTGCACTGAGATCTTTAAGGAGGAATCTGATTTATCAGAAGAAAAGAACAGCTCAGAGAGCACCATAAGGACCACACAGTACATTAAAGAGAAGATCAAAGATGGACATGGACTCTCCACTGAAAGATCCATCAATCTGTTCCTCTCTCTGCTGGAAATGAAAGATGAGACTCTGTCCAAAGAGATTCAGGAGTTTGTGAAATCAGACAAACACTCAGAGAATAAACTGTCTCCTGCTCACTGCTCATCAATCGCCTACATGCTTCAGATGTCAGAGGTGGCCATGGATGAGCTGGATCTCAAGAAATACAACACATCAGATGAGGGTAGAAGACGACTGATACCAGCTGTGATTACCTGCACAAAAGCCCTTCTTGCTGACTGTAATCTCACTGCTCAGGATTGTAAAATATTTTCATCAGTTCTACAATCCTCAAACGATTTCCTGAGAGAGCTGGACCTGAGTAACAATGACCTGCAGGATTCAGGAGTGAAGCTGCTCTCGGGTGGACTGAAGAGTGTGGACTCCAAAGTGTCTGCTGGAGATACTGAGGTTGTCAGGCTGTATGGTGACAGAGGAAGGCTGTGGTTATGTGTCTTCAGCTCTGAGTTCAAACCCCTCACACCTGAGAGAGCTGGATCTGAGCTACAATCACTCAGGAGATTCAGAAGTCAAGCTGCTCAACGAAAAACTCAATGATCCAAACTGTTCACTGCAGATACTCAAGTATGTGGGATAAAAAGGGGATTTTTATAGTTTTCATAGTTTTGATAGTTTTCTATAAA

Function

NR:

description
novel NACHT domain containing gene, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_06458571_06470774.mRNA True 2462 mRNA 0.43 6 6458485 6470927

Neighbor

gene id symbol gene type direction distance location
CI01000005_06435458_06437854 NA coding downstream 20308 6435458 ~ 6438177 (-)
CI01000005_06409550_06410268 NA coding downstream 47815 6409288 ~ 6410670 (-)
CI01000005_06354477_06367249 POLH coding downstream 91109 6354375 ~ 6367376 (-)
CI01000005_06351074_06352066 NA coding downstream 106419 6351068 ~ 6352066 (-)
CI01000005_06327379_06328749 NA coding downstream 129718 6327283 ~ 6328767 (-)
CI01000005_06481721_06483251 NA coding upstream 10428 6481355 ~ 6483265 (-)
CI01000005_06507647_06517258 NA coding upstream 36230 6507157 ~ 6517566 (-)
CI01000005_06518032_06559301 NRXN1B, NRXN1 coding upstream 47105 6518032 ~ 6559436 (-)
CI01000005_06567196_06595338 NRXN1 coding upstream 95982 6566909 ~ 6597439 (-)
CI01000005_06609686_06619218 COX15 coding upstream 138715 6609642 ~ 6619218 (-)
G40225 NA non-coding downstream 7944 6447184 ~ 6450541 (-)
G40196 NA non-coding downstream 55601 6392993 ~ 6402884 (-)
G40240 NA non-coding downstream 162905 6295280 ~ 6295580 (-)
G40229 NA non-coding downstream 168647 6289410 ~ 6289838 (-)
G40179 NA non-coding downstream 193598 6264584 ~ 6264887 (-)
G40228 NA non-coding upstream 37684 6508611 ~ 6554943 (-)
G40310 NA non-coding upstream 177225 6648152 ~ 6648368 (-)
G40313 NA non-coding upstream 180761 6651688 ~ 6651918 (-)
G40316 NA non-coding upstream 209109 6680036 ~ 6681249 (-)
G39515 NA other downstream 623946 5833792 ~ 5834539 (-)
G38415 NA other downstream 2057375 4381238 ~ 4401110 (-)
G38510 NA other downstream 2252277 4204845 ~ 4206208 (-)
CI01000005_01883894_01899867 NA other downstream 4569209 1883222 ~ 1899867 (-)
G36628 NA other downstream 4794206 1663267 ~ 1664279 (-)
G40487 NA other upstream 724868 7195795 ~ 7196428 (-)
G40540 NA other upstream 1055294 7526221 ~ 7532148 (-)

Expression


Co-expression Network