CI01000005_06518032_06559301 (NRXN1B, NRXN1)


Basic Information

Item Value
gene id CI01000005_06518032_06559301
gene name NRXN1B, NRXN1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 6518032 ~ 6559436 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_06518032_06559301.mRNA
AGGTTTATTTGTCTTCAGAGACCGCTTTGTGTGTGTGTGCTACACTCTCTATCTGTCCACTTTGTTAGGAGTTAGAGTTCCAGTTGTCAGCGTGCAGAAATTTTTCAGTGTAAAAAAAAAAAAAGAGAGAACATCATGTCACAAACAATCAAGAAATGTGTGCAGCCATGTTCACGGCCCATCCCTGATGATGATACGTGTGAGTTCTGCTTTGAGTGTTTTGGGGAAGAGCATGCTGCCCTTACGTTCCAGCATGGACACAGAACATTTAACATCCCCCCAACAAGACGAGGCAAGGGACCTGAGACCCTGTTTGCTGGTCAGAATCTGAATGATAATGAATGGCACACGGTGCGAGTGATCAGGAGAGGGAAGAGTCTGAAGCTGTCTGTGGATGATTTGCCCACTGTGGAAGGAGAGATACCAGGTGACCACACACAGCTGGAGTTTCATAACATAGAGACAGGAATTATTACAGAGAAACGCTACCTGCCCATCATGCCCTCCAACTTCATTGGGCATCTCCAGAGTCTAACATTTAACGGCAAGCCGTACATCGACCTCTGCAAGAACGGAGACATCGACTACTGCGAAGTCAATGCCGTGATCGGTTTCAAGAACATCATTGCGGATCCGGTGACCTTCAAGTCCTGCTCAAGCTATATGACTCTGAGCACACTGCAGGCGTACTACTCCATGCACCTGTTCTTCCAGTTCAAGACCACCTCATCCGACGGACTCATCCTGTTCAACAGTGGAGATGGGAATGACTTCATAGCTGTAGAGCTGGTTAAGGGCTACCTGCATTACGTCTCAGATCTGGGAAACGGTGCTCATCTCATCAAAGGAAACTCAAACAAACCTCTCAATGACAACCACTGGCACAATGTCATTATCTCCAAAGACACAAATAACCTGCACACCGTCAAAATCGACACCAAAATTACCACCCAGACCACTGTGGGGGCCAAAAACCTGGACTTAAAAGGTGATCTTTATATTGGCGGTGTTCCCGAGGAGATGTACAAAGATTTACCCAAGTTAGTTCACGCAAAGGAAGGATTTCAAGGCTGTTTGGCGTCTGTGGATCTGAACGGCCGTTTGCCAGACCTGATGTCAGAAGCGCTGGCCTGTGTTGGACAGATTGAGAGAGGATGTGAAGGGCCCAGCACAACCTGTCAGGAGGATTCTTGTGCGAATCAGGGCGTTTGTCTCCAGCAGTGGGAGGGCTTCACCTGCGACTGCAGTATGACCACATACGGAGGACCTCTGTGTAATGATGGGAAGATGTTGGGTGGATGGAGGCTGGTGGACTGGCAGCTCTGCTTAGAGACCCTCATCCGGGGTCTGGCCTCCGTGACCTGCCTCGCCCTATACCTTACAGCTCTCTCACTGGGCATCACAGCCGGATCGGACACCCTCACGAGGACACATCAAACACACTTCACCCATGGAGGAAAGAACCAGCACACCGTGCCTCTCACTATTAACAGATCACCTGGGTCTCTGCGGGCAGGACATGCTGGCACCACGTATATATTTGGGAGAGATGGTGGTCTGATCACATACACGTGGCCGCCGAATGAACGGCCCAGCACGCGAGCAGACCGGCTGGCGATGGGATTCAGCACTCAGCTCAAAGAAGCAATACTGGTGCGAGTGAACAGCTCCTCTGGGTTAGCGTCAGGCTGTCAGGTCAACTATGGCCCGTTGGGTGAATATGGGTTTCGAGAGTTTCACCTCCACTATGTATCAGATGGCAGAAGTGGCCATAGAATTATAAACTCACCACACGTAAAAGGCTACGTTACAGCTATATTTAATGTGGGCACAGATGACATCAACATCGAGGAGAAATCAAAGTTTGTAAATGATGGAAAGTACCACATAGTGAAGTTTACGAGGAGTGGCGGCAATGCCACACTGCAGGTGGACGATCTGCCTGTTATTGAGCGATACCCCACAGAGGTTTTGGGACAAGCCTATTTCCCATTGAGTGCCCGTCAAGGGCTTCTTGAGGCTGGATGTTCAGGGAATGCAGGATTTAGGGATGACGGATCCTCTCACTGTGGAAACATCTGTGGCGAACTACTTGCACCCGGGCCACAGGGCAGCTCTCTATTCAACCGAAGCCTCGCTGTCAAGGGAAAGAGACCTATCAAGCTGACTAGAGAAGATGGGTCGTCAACTAGACTCAGGATCACCCAACCCTGTGATCAGGGAGGAGAAATGTTTAATTGCAGATTTAAACCTGTGCATGTCTCACGGAGCAGTTCAAAGTTGCGGACAGATTATGGACTTAGCAGTTGTAAAAAGGAAGGAGAGGCATTCAAGGTCTGTCTCCCCAGAAAGCTGGCCGAATTTCAGACCCTCAGGAAAAGGGGGACATTTGGATTATCAGCCTACCCATCCCACTCCACTACAACAGTTGGGAAAGGTGGCACCACAGTCAAAGCCCTGTGTTGTAAAACCAAAACAGTCTTTCATGGTCAGAAACACCGGTCGACTACCCCCCAGGGAAACAAGAAGAGGCGGTCGACTAGAGACATCCGTTTGGCATTAGGAAGGGTTTGGAGTAAGGACTCAGGGTTTCTCTGTCCCATCCCTTCAGAACGATTCCTCTCTCCCTCTCGTGGGGAAAATAGAAGGAATTTAAATGTGAAAATTATTCATGTAGACAGTCCAAAGTTCAGTGTATGCAGGAGTTTGGCCCATGTTCTTCAGGTGCCCCCCAAAAAGTTATCTCCCCCTCCACCTACGAGGTTTGTTCTGAGGGAGGAAAGTCGAAAGTACACAAGCATCCCAAAAAAAGTTTTCTCTGATGCATCCAGGCCAAGGGCTGAGGGTGCAGAGTGGGATAAAAGAAGAAAAAGATCACAAAACACTAAAACAATCACAAACAAAAAGAATGTGAGTCCTGTACTGGAGCTGTATTTCCCCTTCTCCACCACTAGTGAGCGAAGACGGGAAGAGCCTGCTTGCTGCTTAGGCAGTGAACTGGCACACTTGTGCAGTTCATTCCTGGGTTTTAACCACTATAGACAGTGGATACAGACTTCAATTTGCTGTAAAGCCCCCTGTTTTGAATGGAGTGGTAATATCAGTAGCCCAAGGGGAATCAGCTCAGGCTTTGGAGGAAGAAATATCCTCCTTAATGAGAAAAGTAGTGATAAGAGTAATTCCAATGGAGAGATTAGGTTTCAAATTAAACCAGACAAAGTGTTGTCTGACTCCTTCACAGGAGATAGTCTACCTGGGTCTCAGGTTGAATTCAGTGATGTTTCGAGCTTTCCTATCAGAGGAACACATCAAAACATTTCACAGCTGCCTCTCTCTTTTTCAACAAGGGAGATCAGTCTCTCTTAA

Function

symbol description
nrxn1b Predicted to enable metal ion binding activity. Predicted to act upstream of or within cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Pitt-Hopkins-like syndrome 2. Orthologous to human NRXN1 (neurexin 1).
nrxn1 Enables type 1 fibroblast growth factor receptor binding activity. Involved in several processes, including positive regulation of protein phosphorylation; positive regulation of signal transduction; and regulation of gene expression. Located in cell surface; nucleolus; and plasma membrane. Implicated in Pitt-Hopkins-like syndrome 2.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007155 cell adhesion biological_process

KEGG:

id description
K07377 NRXN; neurexin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_06518032_06559301.mRNA False 3366 mRNA 0.48 14 6518032 6559436

Neighbor

gene id symbol gene type direction distance location
CI01000005_06507647_06517258 NA coding downstream 466 6507157 ~ 6517566 (-)
CI01000005_06481721_06483251 NA coding downstream 34781 6481355 ~ 6483265 (-)
CI01000005_06458571_06470774 NA coding downstream 47105 6458485 ~ 6470927 (-)
CI01000005_06435458_06437854 NA coding downstream 79855 6435458 ~ 6438177 (-)
CI01000005_06409550_06410268 NA coding downstream 107362 6409288 ~ 6410670 (-)
CI01000005_06567196_06595338 NRXN1 coding upstream 7473 6566909 ~ 6597439 (-)
CI01000005_06609686_06619218 COX15 coding upstream 50206 6609642 ~ 6619218 (-)
CI01000005_06623484_06646729 ABCC2 coding upstream 63908 6623344 ~ 6646729 (-)
CI01000005_06655061_06664135 NA coding upstream 95445 6654881 ~ 6664340 (-)
CI01000005_06721142_06724797 NA coding upstream 161472 6720908 ~ 6724833 (-)
G40188 NA non-coding downstream 41155 6398299 ~ 6476877 (-)
G40225 NA non-coding downstream 67491 6447184 ~ 6450541 (-)
G40196 NA non-coding downstream 115148 6392993 ~ 6402884 (-)
G40240 NA non-coding downstream 222452 6295280 ~ 6295580 (-)
G40229 NA non-coding downstream 228194 6289410 ~ 6289838 (-)
G40310 NA non-coding upstream 88716 6648152 ~ 6648368 (-)
G40313 NA non-coding upstream 92252 6651688 ~ 6651918 (-)
G40316 NA non-coding upstream 120600 6680036 ~ 6681249 (-)
G40349 NA non-coding upstream 194380 6753816 ~ 6754017 (-)
G40378 NA non-coding upstream 378991 6938427 ~ 6938654 (-)
G39515 NA other downstream 683493 5833792 ~ 5834539 (-)
G38415 NA other downstream 2116922 4381238 ~ 4401110 (-)
G38510 NA other downstream 2311824 4204845 ~ 4206208 (-)
CI01000005_01883894_01899867 NA other downstream 4628756 1883222 ~ 1899867 (-)
G40487 NA other upstream 636359 7195795 ~ 7196428 (-)
G40540 NA other upstream 966785 7526221 ~ 7532148 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00001927 NA coding CM030143.1 CM030143.1 19621386 ~ 19634914 (-)