Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU45695 |
| length | 982 |
| lncRNA type | antisense_over |
| GC content | 0.37 |
| exon number | 3 |
| gene id | G40316 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000005 |
| NCBI id | null |
| chromosome length | 7630583 |
| location | 6680036 ~ 6681249 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU45692 | lncRNA | downstream | 28118 | 6651688 ~ 6651918 (-) | True | G40313 |
| TU45689 | lncRNA | downstream | 31668 | 6648152 ~ 6648368 (-) | True | G40310 |
| TU45602 | lncRNA | downstream | 125093 | 6508611 ~ 6554943 (-) | True | G40228 |
| TU45605 | lncRNA | downstream | 138650 | 6538833 ~ 6539939 (-) | True | G40231 |
| TU45562 | lncRNA | downstream | 203159 | 6398299 ~ 6476877 (-) | True | G40188 |
| TU45735 | lncRNA | upstream | 72567 | 6753816 ~ 6754017 (-) | True | G40349 |
| TU45770 | lncRNA | upstream | 257178 | 6938427 ~ 6938654 (-) | True | G40378 |
| TU45771 | lncRNA | upstream | 257842 | 6939091 ~ 6939294 (-) | True | G40379 |
| TU45775 | lncRNA | upstream | 261862 | 6943111 ~ 6945572 (-) | True | G40382 |
| TU45812 | lncRNA | upstream | 312068 | 6993317 ~ 7090894 (-) | True | G40403 |
| CI01000005_06655061_06664135.mRNA | mRNA | downstream | 15696 | 6654881 ~ 6664340 (-) | True | CI01000005_06655061_06664135 |
| CI01000005_06623484_06646729.mRNA | mRNA | downstream | 33307 | 6623344 ~ 6646729 (-) | True | CI01000005_06623484_06646729 |
| CI01000005_06609686_06619218.mRNA | mRNA | downstream | 60818 | 6609642 ~ 6619218 (-) | True | CI01000005_06609686_06619218 |
| CI01000005_06567196_06595338.mRNA | mRNA | downstream | 82597 | 6566909 ~ 6597439 (-) | True | CI01000005_06567196_06595338 |
| CI01000005_06518032_06559301.mRNA | mRNA | downstream | 120600 | 6518032 ~ 6559436 (-) | False | CI01000005_06518032_06559301 |
| CI01000005_06721142_06724797.mRNA | mRNA | upstream | 39659 | 6720908 ~ 6724833 (-) | True | CI01000005_06721142_06724797 |
| CI01000005_06765592_06772165.mRNA | mRNA | upstream | 84024 | 6765273 ~ 6772165 (-) | True | CI01000005_06765592_06772165 |
| CI01000005_06772433_06793278.mRNA | mRNA | upstream | 91184 | 6772433 ~ 6793278 (-) | True | CI01000005_06772433_06793278 |
| CI01000005_06815976_06894322.mRNA | mRNA | upstream | 134129 | 6815378 ~ 6894585 (-) | True | CI01000005_06815976_06894322 |
| CI01000005_07018058_07025374.mRNA | mRNA | upstream | 335592 | 7016841 ~ 7025374 (-) | True | CI01000005_07018058_07025374 |
| TU45564 | other | downstream | 196547 | 6480689 ~ 6483489 (-) | True | G40190 |
| TU44763 | other | downstream | 845497 | 5833792 ~ 5834539 (-) | True | G39515 |
| TU44762 | other | downstream | 845644 | 5833792 ~ 5834392 (-) | False | G39515 |
| TU43542 | other | downstream | 2278926 | 4381238 ~ 4401110 (-) | True | G38415 |
| TU43637 | other | downstream | 2473828 | 4204845 ~ 4206208 (-) | True | G38510 |
| TU45920 | other | upstream | 514546 | 7195795 ~ 7196428 (-) | True | G40487 |
| TU46013 | other | upstream | 844972 | 7526221 ~ 7532148 (-) | True | G40540 |
