Gene
RNA
| Item | Value |
|---|---|
| gene id | G40403 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000005 |
| NCBI id | null |
| chromosome length | 7630583 |
| location | 6993317 ~ 7090894 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU45812 | True | 264 | lncRNA | 0.42 | 2 | 6993317 | 7090894 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000005_06815976_06894322 | SLIT1A, SLIT1 | coding | downstream | 98732 | 6815378 ~ 6894585 (-) |
| CI01000005_06772433_06793278 | NVL | coding | downstream | 200039 | 6772433 ~ 6793278 (-) |
| CI01000005_06765592_06772165 | NA | coding | downstream | 221152 | 6765273 ~ 6772165 (-) |
| CI01000005_06721142_06724797 | NA | coding | downstream | 268484 | 6720908 ~ 6724833 (-) |
| CI01000005_06655061_06664135 | NA | coding | downstream | 328977 | 6654881 ~ 6664340 (-) |
| CI01000005_07093538_07094533 | NA | coding | upstream | 2588 | 7093482 ~ 7094569 (-) |
| CI01000005_07111233_07112234 | NA | coding | upstream | 19828 | 7110722 ~ 7112266 (-) |
| CI01000005_07143500_07144465 | NA | coding | upstream | 52588 | 7143482 ~ 7144565 (-) |
| CI01000005_07190084_07218097 | NA | coding | upstream | 98702 | 7189596 ~ 7218133 (-) |
| CI01000005_07355833_07360372 | NA | coding | upstream | 264939 | 7355833 ~ 7360372 (-) |
| G40382 | NA | non-coding | downstream | 47745 | 6943111 ~ 6945572 (-) |
| G40379 | NA | non-coding | downstream | 54023 | 6939091 ~ 6939294 (-) |
| G40378 | NA | non-coding | downstream | 54663 | 6938427 ~ 6938654 (-) |
| G40349 | NA | non-coding | downstream | 239300 | 6753816 ~ 6754017 (-) |
| G40316 | NA | non-coding | downstream | 312068 | 6680036 ~ 6681249 (-) |
| G40472 | NA | non-coding | upstream | 64467 | 7155361 ~ 7155615 (-) |
| G40497 | NA | non-coding | upstream | 129117 | 7220011 ~ 7220359 (-) |
| G40499 | NA | non-coding | upstream | 131713 | 7222607 ~ 7222893 (-) |
| G40503 | NA | non-coding | upstream | 140712 | 7231606 ~ 7231852 (-) |
| G40518 | NA | non-coding | upstream | 192827 | 7283721 ~ 7284935 (-) |
| CI01000005_06481721_06483251 | NA | other | downstream | 509828 | 6481355 ~ 6483265 (-) |
| G39515 | NA | other | downstream | 1158778 | 5833792 ~ 5834539 (-) |
| G38415 | NA | other | downstream | 2592207 | 4381238 ~ 4401110 (-) |
| G38510 | NA | other | downstream | 2787109 | 4204845 ~ 4206208 (-) |
| CI01000005_01883894_01899867 | NA | other | downstream | 5104041 | 1883222 ~ 1899867 (-) |
| G40487 | NA | other | upstream | 104901 | 7195795 ~ 7196428 (-) |
| G40540 | NA | other | upstream | 435327 | 7526221 ~ 7532148 (-) |
