RNA id: TU45812


Basic Information

Item Value
RNA id TU45812
length 264
lncRNA type read_through
GC content 0.42
exon number 2
gene id G40403
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 6993317 ~ 7090894 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGGTGGCATGCTTGAAAGACAGGCCAACAAAGGTGCTGGAAAATGGCAGGCTCTCACCTGTGCGAGTGCAATGGACTACGTTTGATCTGGCATACTGACTGAAGGATTGCCTGGTGATTTTTGAGGCCTTTTATCAGTGGACTATCAACTATTCTCCTTCTGGGATTATTGGAGGATTATTTTTTCCTCTTCAGTGGTTTGCCTTAGGAATCCAGGAATCCCTGAGAAGTTAATGTGGGTGAGACTGTTGGGTTTTTTTTTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45775 lncRNA downstream 47745 6943111 ~ 6945572 (-) True G40382
TU45771 lncRNA downstream 54023 6939091 ~ 6939294 (-) True G40379
TU45770 lncRNA downstream 54663 6938427 ~ 6938654 (-) True G40378
TU45735 lncRNA downstream 239300 6753816 ~ 6754017 (-) True G40349
TU45695 lncRNA downstream 312068 6680036 ~ 6681249 (-) True G40316
TU45891 lncRNA upstream 64467 7155361 ~ 7155615 (-) True G40472
TU45930 lncRNA upstream 129117 7220011 ~ 7220359 (-) True G40497
TU45932 lncRNA upstream 131713 7222607 ~ 7222893 (-) True G40499
TU45936 lncRNA upstream 140712 7231606 ~ 7231852 (-) True G40503
TU45956 lncRNA upstream 192827 7283721 ~ 7284935 (-) False G40518
CI01000005_06815976_06894322.mRNA mRNA downstream 98732 6815378 ~ 6894585 (-) True CI01000005_06815976_06894322
CI01000005_06772433_06793278.mRNA mRNA downstream 200039 6772433 ~ 6793278 (-) True CI01000005_06772433_06793278
CI01000005_06765592_06772165.mRNA mRNA downstream 221152 6765273 ~ 6772165 (-) True CI01000005_06765592_06772165
CI01000005_06721142_06724797.mRNA mRNA downstream 268484 6720908 ~ 6724833 (-) True CI01000005_06721142_06724797
CI01000005_06655061_06664135.mRNA mRNA downstream 328977 6654881 ~ 6664340 (-) True CI01000005_06655061_06664135
CI01000005_07093538_07094533.mRNA mRNA upstream 2588 7093482 ~ 7094569 (-) True CI01000005_07093538_07094533
CI01000005_07111233_07112234.mRNA mRNA upstream 19828 7110722 ~ 7112266 (-) True CI01000005_07111233_07112234
CI01000005_07143500_07144465.mRNA mRNA upstream 52588 7143482 ~ 7144565 (-) True CI01000005_07143500_07144465
CI01000005_07190084_07218097.mRNA mRNA upstream 98702 7189596 ~ 7218133 (-) True CI01000005_07190084_07218097
CI01000005_07355833_07360372.mRNA mRNA upstream 264939 7355833 ~ 7360372 (-) True CI01000005_07355833_07360372
TU45564 other downstream 509828 6480689 ~ 6483489 (-) True G40190
TU44763 other downstream 1158778 5833792 ~ 5834539 (-) True G39515
TU44762 other downstream 1158925 5833792 ~ 5834392 (-) False G39515
TU43542 other downstream 2592207 4381238 ~ 4401110 (-) True G38415
TU43637 other downstream 2787109 4204845 ~ 4206208 (-) True G38510
TU45920 other upstream 104901 7195795 ~ 7196428 (-) True G40487
TU46013 other upstream 435327 7526221 ~ 7532148 (-) True G40540

Expression Profile