RNA id: CI01000005_07355833_07360372.mRNA


Basic Information

Item Value
RNA id CI01000005_07355833_07360372.mRNA
length 693
RNA type mRNA
GC content 0.49
exon number 5
gene id CI01000005_07355833_07360372
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 7355833 ~ 7360372 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCCTTCTCGGTCATTGTCTGGGCATGTTCTGCTGCTGTTGGTTTGGTGTTTCCCTGTTGGATTTCTTGTTTATTACTCACTTGAGAAGATACCTTTGCATTTAATGATGCAGGTCTTATGTAAACAAGATGGCTGTGACAAGATTCCAGATCAGACTTACACTGAAGAACTGGAGGCAAAGGCTGAAGGTTTCAGTGGAGTAACTGACATCAGAAGCGTCGGATCGATGAAGCGTGACTGTGTTCGGCCCCTCATTACCACAGAAATCATCCTGCGGTTTGAAGGAAACCCTCCAAACCTGTTGGTGCAGACTCCGGAGCCGGAGATGCATCAGGGACGCCTACGCTTACGGCCCTGGCTGGAGGAACAGATCGATTCGGGCAGATATCCTGGAGTCGTGTGGCTGGACGAGTCGGCCAGAGTTTTCCAGATTCCCTGGAAACATGCGGCCCGGCACGGCTGGAATATCGAGAAGGACGCGACTCTGTTCCGAAACTGGGCGATCCACACAGGGAGATACAAACCTGGCATAGACAAACCCGATCCCAAGACATGGAAAGCAAACTTTCGATGCGCACTCAATTCCCTGACGGACGTCAAAGAGCTTCAAGACAAAAGCATCAAGAAAGGCCACAACGCTTTCAGAGTTTATATTCTCCTTCCACACAGCAAAACAATAAAGAGACGCAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46012 lncRNA downstream 12629 7338826 ~ 7343204 (-) True G40539
TU46022 lncRNA downstream 28594 7327035 ~ 7327239 (-) True G40549
TU46020 lncRNA downstream 29681 7325882 ~ 7326152 (-) True G40547
TU46003 lncRNA downstream 36868 7318589 ~ 7318965 (-) True G40531
TU45963 lncRNA downstream 38347 7313244 ~ 7317486 (-) False G40519
TU46023 lncRNA upstream 3504 7363876 ~ 7364088 (-) True G40550
TU46024 lncRNA upstream 4425 7364797 ~ 7365154 (-) True G40551
TU46026 lncRNA upstream 8614 7368986 ~ 7369202 (-) True G40553
TU46016 lncRNA upstream 25088 7385460 ~ 7392722 (-) True G40543
TU46037 lncRNA upstream 65339 7425711 ~ 7425966 (-) True G40564
CI01000005_07190084_07218097.mRNA mRNA downstream 137700 7189596 ~ 7218133 (-) True CI01000005_07190084_07218097
CI01000005_07143500_07144465.mRNA mRNA downstream 211268 7143482 ~ 7144565 (-) True CI01000005_07143500_07144465
CI01000005_07111233_07112234.mRNA mRNA downstream 243567 7110722 ~ 7112266 (-) True CI01000005_07111233_07112234
CI01000005_07093538_07094533.mRNA mRNA downstream 261264 7093482 ~ 7094569 (-) True CI01000005_07093538_07094533
CI01000005_07052874_07068345.mRNA mRNA downstream 287456 7052730 ~ 7068377 (-) True CI01000005_07052874_07068345
CI01000005_07373961_07374634.mRNA mRNA upstream 13038 7373410 ~ 7374634 (-) True CI01000005_07373961_07374634
CI01000005_07398684_07399164.mRNA mRNA upstream 38115 7398487 ~ 7399164 (-) True CI01000005_07398684_07399164
CI01000005_07436839_07437813.mRNA mRNA upstream 75693 7436065 ~ 7438424 (-) True CI01000005_07436839_07437813
CI01000005_07591912_07592984.mRNA mRNA upstream 231540 7591912 ~ 7592991 (-) True CI01000005_07591912_07592984
CI01000005_07593934_07596058.mRNA mRNA upstream 233554 7593926 ~ 7596058 (-) True CI01000005_07593934_07596058
TU45920 other downstream 159405 7195795 ~ 7196428 (-) True G40487
TU45564 other downstream 872344 6480689 ~ 6483489 (-) True G40190
TU44763 other downstream 1521294 5833792 ~ 5834539 (-) True G39515
TU44762 other downstream 1521441 5833792 ~ 5834392 (-) False G39515
TU43542 other downstream 2954723 4381238 ~ 4401110 (-) True G38415
TU46013 other upstream 165849 7526221 ~ 7532148 (-) True G40540

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011267 True 1439 mRNA 0.46 8 NC_007124.7 311380 ~ 318827 (+)