Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU46016 |
| length | 5192 |
| lncRNA type | antisense_over |
| GC content | 0.31 |
| exon number | 3 |
| gene id | G40543 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000005 |
| NCBI id | null |
| chromosome length | 7630583 |
| location | 7385460 ~ 7392722 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU46026 | lncRNA | downstream | 16258 | 7368986 ~ 7369202 (-) | True | G40553 |
| TU46024 | lncRNA | downstream | 20306 | 7364797 ~ 7365154 (-) | True | G40551 |
| TU46023 | lncRNA | downstream | 21372 | 7363876 ~ 7364088 (-) | True | G40550 |
| TU46012 | lncRNA | downstream | 42256 | 7338826 ~ 7343204 (-) | True | G40539 |
| TU46022 | lncRNA | downstream | 58221 | 7327035 ~ 7327239 (-) | True | G40549 |
| TU46037 | lncRNA | upstream | 32989 | 7425711 ~ 7425966 (-) | True | G40564 |
| TU46039 | lncRNA | upstream | 34977 | 7427699 ~ 7427912 (-) | True | G40566 |
| TU46060 | lncRNA | upstream | 66099 | 7458821 ~ 7468238 (-) | True | G40580 |
| TU46065 | lncRNA | upstream | 88801 | 7481523 ~ 7481722 (-) | True | G40585 |
| TU46066 | lncRNA | upstream | 91602 | 7484324 ~ 7484523 (-) | True | G40586 |
| CI01000005_07373961_07374634.mRNA | mRNA | downstream | 10826 | 7373410 ~ 7374634 (-) | True | CI01000005_07373961_07374634 |
| CI01000005_07355833_07360372.mRNA | mRNA | downstream | 25088 | 7355833 ~ 7360372 (-) | True | CI01000005_07355833_07360372 |
| CI01000005_07190084_07218097.mRNA | mRNA | downstream | 167327 | 7189596 ~ 7218133 (-) | True | CI01000005_07190084_07218097 |
| CI01000005_07143500_07144465.mRNA | mRNA | downstream | 240895 | 7143482 ~ 7144565 (-) | True | CI01000005_07143500_07144465 |
| CI01000005_07111233_07112234.mRNA | mRNA | downstream | 273194 | 7110722 ~ 7112266 (-) | True | CI01000005_07111233_07112234 |
| CI01000005_07398684_07399164.mRNA | mRNA | upstream | 5765 | 7398487 ~ 7399164 (-) | True | CI01000005_07398684_07399164 |
| CI01000005_07436839_07437813.mRNA | mRNA | upstream | 43343 | 7436065 ~ 7438424 (-) | True | CI01000005_07436839_07437813 |
| CI01000005_07591912_07592984.mRNA | mRNA | upstream | 199190 | 7591912 ~ 7592991 (-) | True | CI01000005_07591912_07592984 |
| CI01000005_07593934_07596058.mRNA | mRNA | upstream | 201204 | 7593926 ~ 7596058 (-) | True | CI01000005_07593934_07596058 |
| CI01000005_07617632_07620944.mRNA | mRNA | upstream | 224843 | 7617565 ~ 7620944 (-) | True | CI01000005_07617632_07620944 |
| TU45920 | other | downstream | 189032 | 7195795 ~ 7196428 (-) | True | G40487 |
| TU45564 | other | downstream | 901971 | 6480689 ~ 6483489 (-) | True | G40190 |
| TU44763 | other | downstream | 1550921 | 5833792 ~ 5834539 (-) | True | G39515 |
| TU44762 | other | downstream | 1551068 | 5833792 ~ 5834392 (-) | False | G39515 |
| TU43542 | other | downstream | 2984350 | 4381238 ~ 4401110 (-) | True | G38415 |
| TU46013 | other | upstream | 133499 | 7526221 ~ 7532148 (-) | True | G40540 |
