RNA id: CI01000005_07593934_07596058.mRNA


Basic Information

Item Value
RNA id CI01000005_07593934_07596058.mRNA
length 479
RNA type mRNA
GC content 0.54
exon number 5
gene id CI01000005_07593934_07596058
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 7593926 ~ 7596058 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGCAGATTTTCGTGAAAACGCTGACGGGTAAAACCATCACACTCGAGGTCGAGCCGTCAGATACTATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGGATTCCTCCGGACCAGCAGAGGCTGATCTTTGCAGGGAAGCAGCTGGAGGACGGGCGCACACTGTCAGACTACAACATCCAGAAGGAGTCCACTCTGCACCTGGTGCTCCGGCTGCGCGGCGGAGCCAAGAAGAGGAAGAAGAAGTCCTACACCACCCCGAAGAAGAACAAGCACAAGAGGAAGAAGGTGAAGCTGGCCGTACTCAAGTACTACAAGGTGGATGAGAACGGGAAGATCCACCGTCTGCGGCGCGAGTGTCCGGCGGACGAGTGCGGCGCTGGAGTCTTCATGGCCAGTCACTTCGACAGGCATTACTGCGGGAAGTGCTGCCTGACCTACTGCTTCAACAAACCTGAGGATAAATAATCAATAAA

Function

GO:

id name namespace
GO:0022627 cytosolic small ribosomal subunit cellular_component

KEGG:

id description
K02977 RP-S27Ae, RPS27A, UBA80; ubiquitin-small subunit ribosomal protein S27Ae

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46066 lncRNA downstream 109403 7484324 ~ 7484523 (-) True G40586
TU46065 lncRNA downstream 112204 7481523 ~ 7481722 (-) True G40585
TU46060 lncRNA downstream 125688 7458821 ~ 7468238 (-) True G40580
TU46039 lncRNA downstream 166014 7427699 ~ 7427912 (-) True G40566
TU46037 lncRNA downstream 167960 7425711 ~ 7425966 (-) True G40564
TU46084 lncRNA upstream 4487 7600545 ~ 7602965 (-) True G40602
TU46088 lncRNA upstream 9991 7606049 ~ 7606279 (-) True G40604
CI01000005_07591912_07592984.mRNA mRNA downstream 935 7591912 ~ 7592991 (-) True CI01000005_07591912_07592984
CI01000005_07436839_07437813.mRNA mRNA downstream 155502 7436065 ~ 7438424 (-) True CI01000005_07436839_07437813
CI01000005_07398684_07399164.mRNA mRNA downstream 194762 7398487 ~ 7399164 (-) True CI01000005_07398684_07399164
CI01000005_07373961_07374634.mRNA mRNA downstream 219292 7373410 ~ 7374634 (-) True CI01000005_07373961_07374634
CI01000005_07355833_07360372.mRNA mRNA downstream 233554 7355833 ~ 7360372 (-) True CI01000005_07355833_07360372
CI01000005_07617632_07620944.mRNA mRNA upstream 21507 7617565 ~ 7620944 (-) True CI01000005_07617632_07620944
CI01000005_07622471_07624184.mRNA mRNA upstream 25282 7621340 ~ 7624184 (-) True CI01000005_07622471_07624184
TU46013 other downstream 61778 7526221 ~ 7532148 (-) True G40540
TU45920 other downstream 397498 7195795 ~ 7196428 (-) True G40487
TU45564 other downstream 1110437 6480689 ~ 6483489 (-) True G40190
TU44763 other downstream 1759387 5833792 ~ 5834539 (-) True G39515
TU44762 other downstream 1759534 5833792 ~ 5834392 (-) False G39515

Expression Profile