RNA id: CI01000005_07436839_07437813.mRNA


Basic Information

Item Value
RNA id CI01000005_07436839_07437813.mRNA
length 2360
RNA type mRNA
GC content 0.42
exon number 1
gene id CI01000005_07436839_07437813
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 7436065 ~ 7438424 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATGCATCTATTGACATTGGGGCGCTGGAACCAGAAGTTGATCACTGATAGATGTGCTTCCGAAGTGTGTGTGTGTGTGTGCGCGCGCGCGCGTTTTTGTGATTTATGAGGACACAAATTTGTATAATGACATGGGTATTACACTGGTATTACGATGTAAACATGAAATATGAGGACATTTCATGAGTCCTCGTATTTAAAATAGCTTTAAAAACATACTAAACAATGTTTTATTAAAAATGTAAAAATGCAGACAGTTTTCTGTGATGGGAAGGTTTAGTGTAGGGGAATAGAATATAAAGTTTGTACAGTAGGCTATAAAAATCTATGGAAAGTCCGGGCCATAAACCATGGAACATGTAGTTATTTGCATGGAGTGATGGTCGGTATTTACTTCCGTCTAGTGTAGAAACGCGTATCAGATCAGGATCAACTGGCTCTTAAAACCATCCAGTCCAGGCTCCTCCCCTTAGGAACATCCTTAATTAGCGAATTTCTGTTTCCAGTTCTGGCTCTTCTACACTCCAAGTGCTTTTTCTTACATAGGATGTCCTGACATCGCCTGACCTTTATTTTTAAACAAACTCACGCTGCGGTTTGATAAAGCGACATGGATCAGAAAGAATCAACGGCGCTGCAAAAACTGAGTTCATTCAGTATCAAAAGTCTACTGCTTCCATCTAAAAGTGAGAAACACGACACGACACTTCCAGAGAAGAACAAACCGCTGTCGGGCACCGACCCGAAACGATCTCCGGAGCCCACCGGGATGGAGTCCGACTCAGAGAAAGTCAAAGATGCAGAAGAACCCAACAAAACTGTGAAGCTCGACAAACCGCCGTTCAGCTACAACGCGCTGATTATGATGGCAATTAGACAAAGCCCGGAGAAGAGACTAACGCTTAACGGAATCTACGAATTCATCATGAAGAACTTTCCATTTTACCGGGAGCACAAGCAGGGGTGGCAGAATTCCATTCGACACAATTTGAGTCTCAATAAATGCTTTGTTAAAGTGCCGAGACATTACGACGACCCGGGGAAAGGCAACTACTGGATGTTGGACCCTTCGAGCGATGATGTTTTTATCGGCGGTACGACGGGCAAACTCCGGAGACGCTCGGCGACTTCTAGAGGAAAGCTGGCTATTAAGCGAGGACTTCGATTTTCCCCTTTGGGCTTGGGAATAAATGAAACGGCGAATAATCCCCTATACTGGCAAATATCGCCTCTATTATCTTTACACCATCCACATTACAACGGGACGTCGCACGGATTTCTGAATCAAGGTCATGGTTACAGTTCTTTCGTCCCTGGAATAGAGCATTTGGGCAGCCGGGATGCGACTCGACCCATTCTAGGGAGTTCTAGCGGTTACGGAATGAGTTCTTCTCCCGTCGGGTTATTGTCCGTCCCGTCAGGATACTTGCACCCACCGGGCCTTCAGCAAAACGCCTTCAGCTCTCAGCAGACATTACTTACCGACACCCTAAGGACATCTTTCTCATCGTTCTCACCTGCTGTTTCCAGTGGCTTACCAGGAGTTTTGTCCCATCAAGACAGAGTTTCCCCAGATTCATTTTAAACTGATGAGGAAGTGATTTCGCCGAATGCGATGAAATCACAATTATGGAAGCTTGTTTCCGCCACTGAATAAAAAAAGGTAATTGCGACTCTTTATTTGACAATTATGACTTTATTTCTTGCAATTGCGAGTTCAGCCATTTCGCAATTCGGACGCAGTTCCGAGTTGAAGCCTATATCTCAGAATTCTGACTTACTTTTCGCCATATTGTGTGACAAACTCGGAATTGCGAGAAAAAAAAAAAGTCGGAATTGTGAGATAAACCCATTTTCCGTTTCGGAAATAAGCTTCCATATAGACTAAATGCTTCCATATACAATTTTATGATCGAAATTTCATTTTTATGTGCTTCGAAAGCGCAAGCTTTCTTACCTTTTGGTGGAAAAATTGCCAAAGGTTAATGCGATTTAACTCCAGACTATTTATATAACGTTCGAAGTAAAGCTAATTTATGTTTTATTTCTTAAATGTATTTGATGTCATTGTATTCATCCATGATCCATTATTATGCAGTCCTACTGACATTATATATGTTGCGGGTCTCGACAGTGAACTCAACTGGAGTCTGTGAGAGACACTCACTAAGACTTTCATTCATCTTCATTTTCTCAGGTCTGATACAGTCTGCAGACACACACTATAATGAAATATGGGATGTATGATAATGTGGAGCTCACAGCGGCATGCATGTCAATCAGTGTTTAATCTACAAACAGTCCCATAGTGATGTTAGCACGTCTTTGACCCGTACTTTATTCTTCTTTTTCAAATAAA

Function

GO: NA

KEGG:

id description
K09385 FOXG; forkhead box protein G

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46039 lncRNA downstream 8153 7427699 ~ 7427912 (-) True G40566
TU46037 lncRNA downstream 10099 7425711 ~ 7425966 (-) True G40564
TU46016 lncRNA downstream 43343 7385460 ~ 7392722 (-) True G40543
TU46026 lncRNA downstream 66863 7368986 ~ 7369202 (-) True G40553
TU46024 lncRNA downstream 70911 7364797 ~ 7365154 (-) True G40551
TU46060 lncRNA upstream 20397 7458821 ~ 7468238 (-) True G40580
TU46065 lncRNA upstream 43099 7481523 ~ 7481722 (-) True G40585
TU46066 lncRNA upstream 45900 7484324 ~ 7484523 (-) True G40586
TU46084 lncRNA upstream 162121 7600545 ~ 7602965 (-) True G40602
TU46088 lncRNA upstream 167625 7606049 ~ 7606279 (-) True G40604
CI01000005_07398684_07399164.mRNA mRNA downstream 36901 7398487 ~ 7399164 (-) True CI01000005_07398684_07399164
CI01000005_07373961_07374634.mRNA mRNA downstream 61431 7373410 ~ 7374634 (-) True CI01000005_07373961_07374634
CI01000005_07355833_07360372.mRNA mRNA downstream 75693 7355833 ~ 7360372 (-) True CI01000005_07355833_07360372
CI01000005_07190084_07218097.mRNA mRNA downstream 217932 7189596 ~ 7218133 (-) True CI01000005_07190084_07218097
CI01000005_07143500_07144465.mRNA mRNA downstream 291500 7143482 ~ 7144565 (-) True CI01000005_07143500_07144465
CI01000005_07591912_07592984.mRNA mRNA upstream 153488 7591912 ~ 7592991 (-) True CI01000005_07591912_07592984
CI01000005_07593934_07596058.mRNA mRNA upstream 155502 7593926 ~ 7596058 (-) True CI01000005_07593934_07596058
CI01000005_07617632_07620944.mRNA mRNA upstream 179141 7617565 ~ 7620944 (-) True CI01000005_07617632_07620944
CI01000005_07622471_07624184.mRNA mRNA upstream 182916 7621340 ~ 7624184 (-) True CI01000005_07622471_07624184
TU45920 other downstream 239637 7195795 ~ 7196428 (-) True G40487
TU45564 other downstream 952576 6480689 ~ 6483489 (-) True G40190
TU44763 other downstream 1601526 5833792 ~ 5834539 (-) True G39515
TU44762 other downstream 1601673 5833792 ~ 5834392 (-) False G39515
TU43542 other downstream 3034955 4381238 ~ 4401110 (-) True G38415
TU46013 other upstream 87797 7526221 ~ 7532148 (-) True G40540

Expression Profile