RNA id: CI01000005_07190084_07218097.mRNA


Basic Information

Item Value
RNA id CI01000005_07190084_07218097.mRNA
length 1970
RNA type mRNA
GC content 0.39
exon number 5
gene id CI01000005_07190084_07218097
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 7189596 ~ 7218133 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAGAGTCTGCTCTCCAAAATAGATCTATCATAGAAATGTCTAACTGGGGAGTGACAAACGCAGATAATCAAACCATCCAATACTGCTTTCCAAACAACAATTTGTCTTGTTCCAAGAGTATCCGACCTGAAGTGGAGTATATTTTTGTGTACATTTTCGTTGCTGTAACATCAGTGTTCACCGTGTTTCTGAACCTGTTGGTGATCATCTCCATCTCACACTTCAAGCAGCTCCACACTCCCACCAATGTGCTGATCCTCTCTCTGGCAGTGGCTGATCTGATCATAGGACTGATTCTCATGCCAGTGCAGGGAATGAAACTGGTTGAGCCATGCTGGTACTTTGGAGAAATATTTTGCTCAATATTTCCTCTTATTCTTTATGTGGTTCTTACAGCATCTCTTGGTAATTTGGTTATTATATCCGTGGATCGATACATTGCTGTGAATGACCCTTTGCGATATCCAATGAAGGTCAATAATTACAGAGTTGTTGTTTCTATTGTTGTAAACTGGATATTCTCCTTCATATATAATTTTTATCTGTTGTATGAGTTTTTACTGTATCCAGAGAGGAACCACACATGTATTGGAGAATGCATACTTTCTGTGAAGTTGGAAAACATAATACTAGATGCTTTTGTTTGTTTAGTGGTACCTTGTTGTATAATTGTTTCTTTATATGTAAAAATCTGCTTTGTAGCAAACTATCAAGCGAAGCATTTAAATTCAGTCACAGACAAAAAGGCCAGATCAGAAAAAAAGGCTGCAAGAACCTTAGGGATTGTAGTACTGGTTTATCTTCTTTGCTGGATGCCGTACTATTTAACTACTCTTTCTGTTGGGCATGATGAAAATGACACACTGTTAATTAATGTAATGTATTGGATTTTATGCATGAATTCCTTAATACTCAAAATCAGAAAAACAACAACAGTTCTGATAGAATGCTCAGATGGTACTCAGTTCACTCAAAAGTACATTACAGATGTTTCATTCCATATCAGATATTTCCAGTTCACATACCTGAGTGAGATTCACAACCCCAAAGTTAAAGTTTTACCTCACAGTAGAACTGGGCTGGTGTTGGAGTGTCCAGATATGGCAGGTGAAGAAAAACTCACAGTATCTCAGCTCCCTTCAGTAGAAGATGAACACCCGTGCCAACACACCATCTCCGCTAGCACGATGAGCAATGCCCCTCCTGGGAAGGAAAGCCAAGGCTACCATGTCAACCTCATCAAGAAATGGCACAAGAAAATGCCTGAGGGGGAGAGGGCCTTGATAGCATGCAAGGTGTCCCCAAAAGATGTGGGAGATGACGACCAAGTGGATGATGAGGCTGTGAAACATTCCCAAGCAGTGGAACGTTGCAAAGCGCTAAATGGCTGTGAGGGAGAGCGGATGCGCCAGACTCCGGAGTGTGGTGATCTTCAAATCGCGCCGCCACCAGCGTTCTATCTAAGATCAGGCAAAAAGTAAACAGTAAGGGAAAACAATTCCTCATAAATTTCTTTCCAAAGAGACCAATTGAGAACCTATACTGTTCGAGCAAGGCGACGTTGCCGCTGTTTACGTTGTGTAAATAGATGCTTGTTGAACTGGAGTCTGCCTTTTCCTACATAATGAGAAACAACTTGTTTCTAAGCCGGTAATAAGCACTCTTATCATACTCTAATCACTGAAGTAACACGAAAACGAAAAATATATAAAAATTGGCCATCTCAGTAACAGTCATGGAAGATTAAATTAATATCACAGGTGTCATTTTTCTACCATGTATACTATTCAGCAAATATTCTTAAACTATACACATATTATGAAAGCATAATATCAGACATGTAGCCTAATATATGGCTCAGCATAATATCAATCCTGTGTTCATCATGCTTGTAGAGGTACCTACAATGTTAAATAGTTTAGAAAGATTGTAATGTTTTGGAATACAAGGCACAATGTCTGTTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45891 lncRNA downstream 33981 7155361 ~ 7155615 (-) True G40472
TU45812 lncRNA downstream 98702 6993317 ~ 7090894 (-) True G40403
TU45804 lncRNA downstream 124296 7060587 ~ 7065300 (-) True G40402
TU45820 lncRNA downstream 189724 6999253 ~ 6999872 (-) True G40408
TU45818 lncRNA downstream 191253 6997582 ~ 6998343 (-) False G40407
TU45930 lncRNA upstream 1878 7220011 ~ 7220359 (-) True G40497
TU45932 lncRNA upstream 4474 7222607 ~ 7222893 (-) True G40499
TU45936 lncRNA upstream 13473 7231606 ~ 7231852 (-) True G40503
TU45956 lncRNA upstream 65588 7283721 ~ 7284935 (-) False G40518
TU45954 lncRNA upstream 65842 7283975 ~ 7284935 (-) False G40518
CI01000005_07143500_07144465.mRNA mRNA downstream 45031 7143482 ~ 7144565 (-) True CI01000005_07143500_07144465
CI01000005_07111233_07112234.mRNA mRNA downstream 77330 7110722 ~ 7112266 (-) True CI01000005_07111233_07112234
CI01000005_07093538_07094533.mRNA mRNA downstream 95027 7093482 ~ 7094569 (-) True CI01000005_07093538_07094533
CI01000005_07052874_07068345.mRNA mRNA downstream 121219 7052730 ~ 7068377 (-) True CI01000005_07052874_07068345
CI01000005_07035672_07037203.mRNA mRNA downstream 152320 7034777 ~ 7037276 (-) True CI01000005_07035672_07037203
CI01000005_07355833_07360372.mRNA mRNA upstream 137700 7355833 ~ 7360372 (-) True CI01000005_07355833_07360372
CI01000005_07373961_07374634.mRNA mRNA upstream 155277 7373410 ~ 7374634 (-) True CI01000005_07373961_07374634
CI01000005_07398684_07399164.mRNA mRNA upstream 180354 7398487 ~ 7399164 (-) True CI01000005_07398684_07399164
CI01000005_07436839_07437813.mRNA mRNA upstream 217932 7436065 ~ 7438424 (-) True CI01000005_07436839_07437813
CI01000005_07591912_07592984.mRNA mRNA upstream 373779 7591912 ~ 7592991 (-) True CI01000005_07591912_07592984
TU45564 other downstream 706107 6480689 ~ 6483489 (-) True G40190
TU44763 other downstream 1355057 5833792 ~ 5834539 (-) True G39515
TU44762 other downstream 1355204 5833792 ~ 5834392 (-) False G39515
TU43542 other downstream 2788486 4381238 ~ 4401110 (-) True G38415
TU43637 other downstream 2983388 4204845 ~ 4206208 (-) True G38510
TU46013 other upstream 308088 7526221 ~ 7532148 (-) True G40540

Expression Profile