RNA id: TU45804



Basic Information


Item Value
RNA id TU45804
length 2462
lncRNA type intronic
GC content 0.41
exon number 2
gene id G40402
representative True

Chromosome Information


Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 7060587 ~ 7065300 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CACATGAGCCAATGTTTTATTCACAATAGAACATAGATAACACAAATGTTTAAATGGAGAAATTTTACATTTTTTTTATGCACAAAATGAGCTCATTTCAAATTTGCCTGCTCCAGTTTTGGGACGTCGGAGTGTTGCTTGCGCACTGTTGCTTTGAACGCCTTCAGTCTGTTATTGTCTGTACATCGCTTGCCTTGGAGATGCAAGACTGTGGCCTTTTGTTCCGCTGCCAGCTGGTGGTCGTTTGAGCCAGTACATTGTTGATTTGTGTTGTTTGTTTTTTGTGTGTGTCTTGTTAAAGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTGAGTGGGATTGAAGTTTATTTATTTTTTGTTGTTGTTGTTGTTGTTGTTGCTTGGTTTGTTTATTGTATTATTCTTATTTGTATTATTTGGTTTCATTGTTAGTTGATTTGGTTTAGGTGTTTGTTTGAATTTTGTTATTGGGGTTTGTTGGGTATTATTTCTTTGTCTTACTATACATTGATATTGCTCAGTTAAGAAACTGAGAATTTATGGTTTATTTTGGGTGATTCTTTTTTTTTGAGTTTCTTTTTTTTTCTCCTTTCTTATGGTGTATTATGTTGTGTTGGTTTAAAGTAGTTAACGTATAATTTTGTTGTTTTTTGGTCGGTTTGGATTGTTTAAATGTATTACTTTTTTTCACTCTTGGTTCATGATTTGAGCTGTATGAAATGTTTGGTGTAACGATATAACATCAAAGAAACTATCCACCTGTAGTAATTCTTTTTTTTTTTTTTTTTTTTTTGGGGGGGCTTTTTTTTTTTTTTTTTTTGTGATCTGTTGCTTCTTTTTTTGTATTGTTATTCATTATTGTCGTTATTGTTATTATTGTTACTGTTGTTATTATTATCTTTTTTTTTTTTTTTTTTGCGTATAGGGGTGGCCGGTTCATTTGGTCTGACTAAACCAAAGCCAATGGGCTGGTTGTAGCATTGAAGCACATTGTATAGTAATTGAAGACTCGTCTTTTGGGGGCCCCATAAGCAAGGTATTTTGGCCACCTCTGCTACCAGTGCCACTGAATGCTAGCTTGGTTTAAGCCAAGTGGTTGACTTTTAAGCGTAAAGTGTCTTTTCTTACGAATGTTGAGCTCAATGTTTTAATAGTGTCTTTTTGATAAATAAACTTGTGATCTTGTGATCATTATGTTTCTGCTTGTCCTTTTCATTTAGTTGAAAGCCTACTACTGGGAGGCTTAAAAATGTGGGGGTCTTTTATCAGGGGTATAATCTGATTAGGTCTCGATCACACATATCTCTTGACCAAAATAAACATTAGGATGGATTGGGTAAAATGTGTCAGGGTAATGTAAATTACCTGAAGGATGTGTTGTACTATCCAGCCCACTAGGGGGACTTAAGGAGTACTGTATGGACAAGTTACACACAGAAGTGAGTAAGAGTGTTCCTGATGTAAACTAACTGAATACAGAATACTGAATACTAACTGGTCTCTGGGGCTCTTCAATAAATCTCAAGAGATGATTAATGCCTCCTTGTAAATGTATACTAGACATGGTGTCGGAAGTGTAAAAACAAGAGAAGAGCAATATGTCGAAATTGAATCCGCCAGAAAGTTTGAACTTTGATCGTCCAGCAGAGTGGCCAGGTTTGTGCACTACAGGTCTGCAACAAAACTGAGCAAAGAAGATAAAGAGGTACAGATTAGCACTTTATTACATTCTATGGGCACTGAAACAGAACATTTTCGAATCGCTCACCTTCTCGGCAAAGGAAAGTGCTTGACGTTGCTTGGAAAATTTGATTAATATTTTTTGCCGAAAGAGAACATGATACATGAGCAGGCATGTTTCCACCAGAGAGTGCAGAAGCCCGAAGAAAAGGCTAAGTGCTACATCAGAGCCCTCTAGGAACTGTGAATTTAGTGCAAGTCGAAACGAACATATAAGAGACAGACTTGTAGTCGGAATTCAGGATAAAGAGCTTTATAAAGAATGCAGCTAATGACAGCACTTACCCTGGAAATGGCGATGCAGATGACGTGGCAGACTGATGATGTTGCGCAGCAGATCAGCCAGCAGGAGGGTCAGTCAATGAGCAGCGTGTAAGAGGTAGCCCCCTGGATGAAAGAGACACACAAAAGAGGCAGTGAGAAAGAAGAAAGGATACAGAGAATGTATGTGGCAGGGGAGAGTGTGATGTATTGATTACTGTTACAGTCACGCCTGTCCTGAACTCCGTTTCCCATGATCCTCCCTGTTCCTCACCTGAACTCACTTCCCTCATCTGCTTTCCCGCTCTTCCTGCATTCCCTGCACCTGTTCATCATCGTTAGCACTCCCTTTATGTTGGACTCACTCCTTGCACTCCTGGTCCGTTCTTGTTGTTAACCTTTGTTTAATGTGTATGAGCTGTTCTGATTCCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45820 lncRNA downstream 60715 6999253 ~ 6999872 (-) True G40408
TU45818 lncRNA downstream 62244 6997582 ~ 6998343 (-) False G40407
TU45819 lncRNA downstream 62244 6997621 ~ 6998343 (-) True G40407
TU45775 lncRNA downstream 115015 6943111 ~ 6945572 (-) True G40382
TU45771 lncRNA downstream 121293 6939091 ~ 6939294 (-) True G40379
TU45891 lncRNA upstream 90061 7155361 ~ 7155615 (-) True G40472
TU45930 lncRNA upstream 154711 7220011 ~ 7220359 (-) True G40497
TU45932 lncRNA upstream 157307 7222607 ~ 7222893 (-) True G40499
TU45936 lncRNA upstream 166306 7231606 ~ 7231852 (-) True G40503
TU45956 lncRNA upstream 218421 7283721 ~ 7284935 (-) False G40518
CI01000005_07035672_07037203.mRNA mRNA downstream 23311 7034777 ~ 7037276 (-) True CI01000005_07035672_07037203
CI01000005_07018058_07025374.mRNA mRNA downstream 35213 7016841 ~ 7025374 (-) True CI01000005_07018058_07025374
CI01000005_06815976_06894322.mRNA mRNA downstream 166002 6815378 ~ 6894585 (-) True CI01000005_06815976_06894322
CI01000005_06772433_06793278.mRNA mRNA downstream 267309 6772433 ~ 6793278 (-) True CI01000005_06772433_06793278
CI01000005_06765592_06772165.mRNA mRNA downstream 288422 6765273 ~ 6772165 (-) True CI01000005_06765592_06772165
CI01000005_07093538_07094533.mRNA mRNA upstream 28182 7093482 ~ 7094569 (-) True CI01000005_07093538_07094533
CI01000005_07111233_07112234.mRNA mRNA upstream 45422 7110722 ~ 7112266 (-) True CI01000005_07111233_07112234
CI01000005_07143500_07144465.mRNA mRNA upstream 78182 7143482 ~ 7144565 (-) True CI01000005_07143500_07144465
CI01000005_07190084_07218097.mRNA mRNA upstream 124296 7189596 ~ 7218133 (-) True CI01000005_07190084_07218097
CI01000005_07355833_07360372.mRNA mRNA upstream 290533 7355833 ~ 7360372 (-) True CI01000005_07355833_07360372
TU45564 other downstream 577098 6480689 ~ 6483489 (-) True G40190
TU44763 other downstream 1226048 5833792 ~ 5834539 (-) True G39515
TU44762 other downstream 1226195 5833792 ~ 5834392 (-) False G39515
TU43542 other downstream 2659477 4381238 ~ 4401110 (-) True G38415
TU43637 other downstream 2854379 4204845 ~ 4206208 (-) True G38510
TU45920 other upstream 130495 7195795 ~ 7196428 (-) True G40487
TU46013 other upstream 460921 7526221 ~ 7532148 (-) True G40540

Expression Profile