CI01000005_06815976_06894322 (SLIT1A, SLIT1)


Basic Information

Item Value
gene id CI01000005_06815976_06894322
gene name SLIT1A, SLIT1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 6815378 ~ 6894585 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_06815976_06894322.mRNA
ATGACCTTTTAACATGCTTAATGCTTAAATGTATCATACTATGGTTTTATTTGAATTCATCCTACAGAGAATGTCATTGATTTTGAAAGGCATATTTTCATTAGGGGTTTAATTTTTACTATGATATCCACAATTGGTCCTTTTGCTGGTGTAGTGTGAGTGTATCTGTGAAGCGCAGGATGATGGCCATATCTTTTGTATTCCAAGCTTAATGTTGCAAAAGCATCTCATGGCATTCATTTTTCATATTCATTTAATTAACTATGACTTTCTCAAAAAGAATGGCTGTTCTTGTGATAAAACAGAGATATAGAGAAAACTTCAATCCAAGTATAATGCTGAGACAATCCACACATCCATGTCATCATCAGAGGCAGAAAAATGACTGTCCGAACAAACAAGGCAGACGGCTGAGCAAAAGCAGTGAGGCAGGAGCGCGTTACGCACGCAAGCGGCGAAGCAACTCCTCCAAGAAGAGGAAAAGGAGAGTTTGTGCAAAAAGTGAAGGAGCCGCTTTTTTTTTCTGGGAGAGCACTAGCCTGAGCGCTCGCGTCTCAAGGATCATGCCTGCGAGAGGAGGATACTCTGTAGGCAGGCTGGTGGAGGCGTGCATCCGGATACTGCTGCTGTGCAAGGCTGCCACGGCGTGTCCTGCGCTCTGCACTTGCAGCGGCACCACAGTGGACTGCCACGGGCTGGGGCTCAAAACCATGCCCAGGAACATACCCAGAAATGCAGAGAGGCTACAAACATTTTCTGGGCTTCTGCCTGAGATTTTGGCCAATGAGAAGGTTTTTGAAGAGTATGAATGTGCCAGACAACTAAAGGAACTGAATGGAAACAACCTCACACGCATCAACAGAAATGACTTTTCTGGACTCAAGTATCTTCGAGTTTTGCAGCTGATGGAGAACCAGATTGGAACGGTGGAGCGTGGAGCGTTCGATGACATGAAGGAGCTGGAGAGACTACGTCTGAACAGAAACCAGCTTCACCAGCTTCCAGAGCTTCTGTTTCAGAAGAACGCGGCTCTGTCCAGACTTCAGTTAGACAAGAATCACATCAGCTGCATCGAGGACGGCGCTTTCCGTGCATTACGTGGGCTTGAAGTTTTCCGTTTACATTCCAACAACCTGAACTGTGATTGTAATCTTGCCTGGTTGTCGCAGTGGTTGCGCGAGCGGCCGACCATCGGTCTGTTCACCCAGTGCAGCTCTCCAGCTCCACTGCGAGGACTTAATGTAGCCGAGGTCCAGAAACATGAATTCAGCTGTTCAGGTCAGTCTGAGAGTGCTGCGGTTCAGTCGTGTAGTTTGGCCACGGGTTCGTGTCCGGCCGTCTGCACCTGCAGTAATAATATAGTGGACTGCAGAGGGAAAGGACTGACGGCGATCCCGGCCAACCTGCCCGACAGCATGGCGGAGATACGACTGGAACAGAACGGCATCAAATCCATTCCTCCCGGAGCCTTTTCTCCTTATAAGAAACTGCGCCGAATGGTTCTGTACGGAAACAAGATCACTGATCTGCCCAAAGGAGTGTTTGATGGACTCTACGCCCTCCAGCTGCTGCTTTTGAATGCGAACAAGATCCACTGTCTTCGTGCAAACACCTTTCAGGACCTGCAGAATCTCTCGCTGCTTTCTTTATACGACAACAAAATCCAAACGCTGGCCAAGGGCACCTTCACCTCGCTGCGCGCAATACAGACCCTTCATTTGGCTCAGAATCCGTTCATCTGTGACTGTAATCTCAAGTGGCTGGCCGATTACCTGCGCTCCAACCCCATCGAGACCAGCGGAGCCCGCTGCACCAGCCCTCGCCGGCTCGCCAACAAACGCATCGGCCAGATCAAGAGCAAGAAGTTCCGCTGCTCGGCCAAAGAGCAGTACGTCATCCCGGGAACGGAGGACACCAGACTGAACAACGACTGTAATAATGACCCGGTCTGTCCCGCCAAATGCCGCTGTGAGTCTAACGTAGTGGACTGTTCCAATCTGAGACTAAACCGCATCCCTGAGCACATCCCAGCATCCACCACTGAACTCCGTCTCAACAATAACGAGATCACGACGATAGAAGCCACAGGTGTTTTCAAGACGCTTTCTCACCTGAAGAAAATAAACCTGAGCAACAATAAGATCTCTGAGATCGAGGACGGGGCGTTCGAAGGGGCTTCTTCGGTCAACGAACTGCACCTGACGGCAAACCAGCTGGATTCGGCGCACAGCGGGATGTTCAGGGGTCTGGACGGCCTGCGGATGCTAATGCTGCGGAACAATCGCATCAGCTGCATTCACAACAACAGCTTCACGGGCTTGCACAATGTCCGTCTGCTGTCCCTGTATGACAACACACTGACCACCATCACGCCTGGAGCCTTCGACACGCTGCAGAGCCTCTCCACCCTAAACCTGCTGGCCAACCCATTCAACTGCAACTGCCATCTGGCCTGGCTGAGCAGTTGGCTGAGGAACCGTAAGATCGTCACGGGGAACCCGCGCTGCCAGCGGCCGGCCTTCCTCAAAGAGATTCCCCTGCAGGACGTCGCATTACCAGATTTCCGCTGCGAAGACGATCAAGAGGAAGCGAGCTGCACGCCGCCCATCCAGTGTCCCGCCGAGTGCACCTGTCTGGAGACGGTGGTGCGCTGCAGCAACAAACACCTGCGCCTCTTACCCAAAGGCATTCCTCGCAACGTCACCGAGCTGTACCTGGACGGAAACCAGTTCAGCGCAGTGCCAAAGGAGCTGTCCAACTTCAAAAACCTGCAGCTCGTGATCCTGAGCTATAACGCTCTTCGCTGTATCCCGACTCTGGCCTTCGGGGGTCTTCGATCTCTCCGCTTGCTTTCTTTGCATGGCAATGACATCTCAGAGCTGCCTGATGGGATCTTCAACGACGCTGCATCACTGTCACATCTGGCCATCGGTGCAAACCCTCTGTACTGCGACTGCCGCCTGCGCTGGCTCTCGGACTGGGTGAAAACCGGCTACAAGGAGCCTGGCATCGCGCGCTGCATTGGGCCGCACGGCATGGAGGGAAAACTGCTGCTGACCACCCCCGCCAAGAGGTTTGAGTGTCAGGGTGAAGTGGACACTACGATACTGGCGAAGTGTAACCCGTGCATGTCTGGCCCCTGTCTGAACCACGGCAGCTGCGAGGCGGATCAGACGGACGGATACAGGTGCAGCTGCTCCGAGGGTTTTAAGGGCAAAAACTGTGAGACGGTGATTAACGCTTGTGTCAGTGAGCCCTGTAAGAACGGAGGAACATGCCACACGTCTGGAGAAGAGGATGAAGACTTTAGCTGTTCATGTGCTGCAGGCTTTGAAGGACCCACGTGTGACACTGACATTGATGAGTGTAAAGATAACGACTGTCAGAACGGAGCGACCTGCATAGACGGGATCAACAACTACACATGTTTATGTGCCCCTTTTTACACAGGGGAGATGTGTGAGGATATGGAGGATATGTGTGCTTCTACTCGTAGTCCCTGCAAGCATCAGTCAACCTGCTTCATCACAGTCACAGGCCCAAAGTGTATATGCGCACCTGGTTATGTGGGTGACGACTGCAGTGTGAACTATGATGACTGTAAGGACCACAGGTGTCAGAATGGGGCGCAGTGTGTGGACGAGGTCAACGGATACTCCTGTGTTTGCCCGAAGGGCTTCAGAGTGTTTTGTTGGGAGTATTATGGGAGTATGGAGTACTGGAGCCACTTATGCATGCCATCCGGTCACTATACAACTTGTTCTAGAGGATCTCAAGGCACAGGCGAGGAGTGGAGTGTTTCCAGTTTGGGGGCCTCAGGCTGGAATTTGCTAATTATGGCCAAGTGTGAAGCGACTGGGATGAGGGTCTGGACCTCCATATCGGAGGCCTTGGTTGTCAGCCAGAAAGAGGTAGATTGTCCTCTTCGGGTAAGAAGGGAGTTCCTTCCACAAGTGCAGGAGTTTACCTATCTTGGGGTCTTGTTCACGAGTAAGGATGCTAAGTCCTGTGGTGATGGGTGCAGGCGGAAGATACCACTGGGAGGACTTAGTCATGGATCTGCACGTAGGCGGCCTGGGTGTGAAGGTCATTTGATGCTGACCTGGAACAACAGTACCATCCGTATCCTGCCCAGTGGACAGCTTTGTGAAGTCCCATCTACACCGCGCTCTCTCTGTGAGTTGGCCGACTGTCAGAACAACGCCCCCTGTGTGGAGCGGGGGGGTCATCCTCTGTGTCAGTGCTTGGCAGGGTTTGGTGGACCACGCTGTGAAAAGTTGGTCAGTGTCAACTTTGTGGACAGAGACTCCTACCTGCTACTGAGTGACCTGAAGAACTGGCCTCAAGCCAACATCACACTACAGGTGTCCACGGCAGAGGACAATGGCATTCTTCTGTACAATGGGGACAATGACCACATTGCTGTAGAGCTTCATGAAGGTCATGTTAAAGTCAGCTATGACCCTGGCAGCCAACAAAGTCATGCAATCTACAGTACTGAGACCGTCAATGATGGTCAGTTCCACACTGTAGAACTGGTGACCTTTGACCAGATGGTGAACCTTTCCATAGACGGTGGCATCCCAACAACCATGGACAGCTTTGGTAAAGTGCAGCCCTTGAGGGGAGAAGCTCCATTATATGTGGGAGGCATGCCGGTCAGCGTCCACCCCACTGCTCCTCGTGTGTGGCAGATACAAAACGGCTCCAGTTTCCACGGTTGCATTCAGAACCTTTACATCAATAATGAGCTACAAGACTTCACCAAAACCCAGATGAAACCTGGTGTGGTGCCCGGATGTGAGCCCTGCCGAAAGATATACTGTCTCCATGGCATCTGCCAACCCAACACCGCCACGGGCCCCGTTTGCCACTGCCAGCCTGGATGGAGCGGGCAACACTGTGACCAGCCTTCTGCGAACCCCTGCCTGGGCAGCAAGTGTGTCCATGGGAGATGTATTCCAATGGACATGCAGTCGTACCGCTGTGAATGCCAGGAGGGTTTTCATGGTGCCCTGTGCAACCAGCAGGAAGAACTCTTCAATCCGTGCAGAAGGCTACAATGCAAACATGGTCACTGTCAGATATCTGACACAGGAGATGCCTACTGTCACTGTGAGGTGGGCTACAGCGGGGAGTTATGTGACAAGGAGTCCGAGTGCCACGGGGAGCCAGTACGGGACTTCTACCAGGTCCAGCGAGGGTACGCCATCTGTCAGACCACACGCATGGTGTCATGGGTGGAGTGCAGCGGTGCCTGCGACACCGGCTCCTGCTGCGCCAGCCAAAGGATGAAGCGCAGGAAATACACTTTCGAGTGCAGCGACGGCACGTCCTTCAGCGAGGAGGTTGAGAAGACCATCAAGTGTGGCTGTGTGGGGTGCATGTAGAACACAACCACTAGCATCACCACCTCATCACAGTCTGACAGAACCACAGAAAGAGCCATCACAAAAAAAGCCAACAGAAAAAGATATCATGTTTCATTGGGTATACAAAGACATACCCCCCCCCCCTTTAGATTTCCACCACAGCCTGAAATTTCAACCCTTTTTTGTCCTTTCGTAAGGTCTCAGAAGGGTAAAACAACACCAACTCTGCTGACAGGAAGGCGAGCGAGATGGACCCTGGCTTGTTTCAGCCCAAAAACAGGACATTAGTCATGTATTAGAAGAAAATGATGGTCTTTTTGACTCTCTCTGCAGTGCAGGACATGTATTTGAGCAGATAAGGCTCCGTAATGGTGATGAAAGGAAGATCCATATTTCCACCATGCCTGAAAAAACTGTATGTATGATAAATCTGTGTGGGAGAATACATCCTCAGTGACATGCTGGTAAAATAGAAGGTGTGAAACAAGTACAGCAGGAGATGTGCATGGAACCACATGCTGTCTAACCAGATATTTCCAATGGTTTTGTGTTATGGGCGGCACACGGGACTCTGTCCCTGCCCCAATTCCACTGCAAATATGACACCATTAATAAA

Function

symbol description
slit1a Predicted to enable Roundabout binding activity and heparin binding activity. Acts upstream of or within cranial nerve morphogenesis and positive regulation of axon extension. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in central nervous system and retinal ganglion cell layer. Orthologous to human SLIT1 (slit guidance ligand 1).
slit1 Enables Roundabout binding activity. Involved in axon extension involved in axon guidance; motor neuron axon guidance; and negative chemotaxis. Predicted to be located in extracellular region. Predicted to be active in extracellular space.

GO:

id name namespace
GO:0035385 Roundabout signaling pathway biological_process

KEGG:

id description
K06838 SLIT1; slit 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_06815976_06894322.mRNA True 5988 mRNA 0.52 38 6815378 6894585

Neighbor

gene id symbol gene type direction distance location
CI01000005_06772433_06793278 NVL coding downstream 22100 6772433 ~ 6793278 (-)
CI01000005_06765592_06772165 NA coding downstream 43213 6765273 ~ 6772165 (-)
CI01000005_06721142_06724797 NA coding downstream 90545 6720908 ~ 6724833 (-)
CI01000005_06655061_06664135 NA coding downstream 151038 6654881 ~ 6664340 (-)
CI01000005_06623484_06646729 ABCC2 coding downstream 168649 6623344 ~ 6646729 (-)
CI01000005_07018058_07025374 LGI1A, LGI3 coding upstream 122256 7016841 ~ 7025374 (-)
CI01000005_07035672_07037203 NA coding upstream 140192 7034777 ~ 7037276 (-)
CI01000005_07052874_07068345 NA coding upstream 158145 7052730 ~ 7068377 (-)
CI01000005_07093538_07094533 NA coding upstream 198897 7093482 ~ 7094569 (-)
CI01000005_07111233_07112234 NA coding upstream 216137 7110722 ~ 7112266 (-)
G40349 NA non-coding downstream 61361 6753816 ~ 6754017 (-)
G40316 NA non-coding downstream 134129 6680036 ~ 6681249 (-)
G40313 NA non-coding downstream 163460 6651688 ~ 6651918 (-)
G40310 NA non-coding downstream 167010 6648152 ~ 6648368 (-)
CI01000005_06518032_06559301 NRXN1B, NRXN1 non-coding downstream 273992 6518032 ~ 6559436 (-)
G40378 NA non-coding upstream 43842 6938427 ~ 6938654 (-)
G40379 NA non-coding upstream 44506 6939091 ~ 6939294 (-)
G40382 NA non-coding upstream 48526 6943111 ~ 6945572 (-)
G40403 NA non-coding upstream 98732 6993317 ~ 7090894 (-)
G40407 NA non-coding upstream 102997 6997582 ~ 6998343 (-)
CI01000005_06481721_06483251 NA other downstream 331889 6481355 ~ 6483265 (-)
G39515 NA other downstream 980839 5833792 ~ 5834539 (-)
G38415 NA other downstream 2414268 4381238 ~ 4401110 (-)
G38510 NA other downstream 2609170 4204845 ~ 4206208 (-)
CI01000005_01883894_01899867 NA other downstream 4926102 1883222 ~ 1899867 (-)
G40487 NA other upstream 301210 7195795 ~ 7196428 (-)
G40540 NA other upstream 631636 7526221 ~ 7532148 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006336 slit1a coding NC_007124.7 CM002897.2 555321 ~ 638485 (-)