RNA id: TU45819


Basic Information

Item Value
RNA id TU45819
length 640
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G40407
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 6997582 ~ 6998343 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGTGTGATAATGAAGAAAATTTTATTTGTATATTCAACAGAAACAGAATATGTCTGGCTCAGCTCAGCTCATGGTCAGCTCAAATAAGGATCCCCAAAACTGTGCCCACAGTGGCCCCTGCAGCGCCCACAGCTGCCTGACCCACAATTGGGATTCCAGCCGCACCTATTGACTTTATTGTACATCATCTTCCACAATCCTGACATCTGCATTACCAGCGGCTTGAAGAACTGCAACCATTGATCCGGCTGCGACCCCCCCTCCATTCGCCACAGCGGCAGCTGACATTAGTGATGCCGCGTAAGAGCCTGCGGCGATCCCGGCGCTAGTGAAACCCACAGTCGCCAGAACAACTGGAGCAGCAGCAACTGCACCGGCTAAAACACAGTGTTAACTAACTGATGAACATCGTTATAAAGATCATTAAATACCACTAAAAATTATTTTGACAAGTATGACTTTGACTATTTCAGTATTTTTAATTTTAGATTATTAAATTACAGTTGTTTGTTTGGTGATTTTGTTAGATTTTACCTGCTCCAGCACCAGCTGCGATCAGCATCACTAATATAAATGAGAAAATAAGGGTAAGATTTCTGTTAATGCTGATAAACCAACATTAAGATCCTGCAGTTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45775 lncRNA downstream 52049 6943111 ~ 6945572 (-) True G40382
TU45771 lncRNA downstream 58327 6939091 ~ 6939294 (-) True G40379
TU45770 lncRNA downstream 58967 6938427 ~ 6938654 (-) True G40378
TU45735 lncRNA downstream 243604 6753816 ~ 6754017 (-) True G40349
TU45695 lncRNA downstream 316372 6680036 ~ 6681249 (-) True G40316
TU45820 lncRNA upstream 910 6999253 ~ 6999872 (-) True G40408
TU45804 lncRNA upstream 62244 7060587 ~ 7065300 (-) True G40402
TU45891 lncRNA upstream 157018 7155361 ~ 7155615 (-) True G40472
TU45930 lncRNA upstream 221668 7220011 ~ 7220359 (-) True G40497
TU45932 lncRNA upstream 224264 7222607 ~ 7222893 (-) True G40499
CI01000005_06815976_06894322.mRNA mRNA downstream 103036 6815378 ~ 6894585 (-) True CI01000005_06815976_06894322
CI01000005_06772433_06793278.mRNA mRNA downstream 204343 6772433 ~ 6793278 (-) True CI01000005_06772433_06793278
CI01000005_06765592_06772165.mRNA mRNA downstream 225456 6765273 ~ 6772165 (-) True CI01000005_06765592_06772165
CI01000005_06721142_06724797.mRNA mRNA downstream 272788 6720908 ~ 6724833 (-) True CI01000005_06721142_06724797
CI01000005_06655061_06664135.mRNA mRNA downstream 333281 6654881 ~ 6664340 (-) True CI01000005_06655061_06664135
CI01000005_07018058_07025374.mRNA mRNA upstream 18498 7016841 ~ 7025374 (-) True CI01000005_07018058_07025374
CI01000005_07035672_07037203.mRNA mRNA upstream 36434 7034777 ~ 7037276 (-) True CI01000005_07035672_07037203
CI01000005_07052874_07068345.mRNA mRNA upstream 54387 7052730 ~ 7068377 (-) True CI01000005_07052874_07068345
CI01000005_07093538_07094533.mRNA mRNA upstream 95139 7093482 ~ 7094569 (-) True CI01000005_07093538_07094533
CI01000005_07111233_07112234.mRNA mRNA upstream 112379 7110722 ~ 7112266 (-) True CI01000005_07111233_07112234
TU45564 other downstream 514132 6480689 ~ 6483489 (-) True G40190
TU44763 other downstream 1163082 5833792 ~ 5834539 (-) True G39515
TU44762 other downstream 1163229 5833792 ~ 5834392 (-) False G39515
TU43542 other downstream 2596511 4381238 ~ 4401110 (-) True G38415
TU43637 other downstream 2791413 4204845 ~ 4206208 (-) True G38510
TU45920 other upstream 197452 7195795 ~ 7196428 (-) True G40487
TU46013 other upstream 527878 7526221 ~ 7532148 (-) True G40540

Expression Profile