RNA id: CI01000005_06765592_06772165.mRNA


Basic Information

Item Value
RNA id CI01000005_06765592_06772165.mRNA
length 2854
RNA type mRNA
GC content 0.44
exon number 7
gene id CI01000005_06765592_06772165
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 6765273 ~ 6772165 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAACAGATCTCGTTTATGGTGCTGGAAGGATCCACCACTGACATCATCCTGGGATGCCCGTGGATGTTACAAGAAATGTCCCAACACGATCCCAACATCAACTGGAACTCTGGGGAGATGCTGTAATGGAGTGAGTCCTGCTTTCACGTATGCCTGTCTCCGGTTGTCAAACCTCCTGTTCGTCGTCCCAAAGTTTCGCAGTAACGAGGACATTGTCAGATCTCATGCTGGACCAAATGTGAGCGCCACAGCTCAGAGTGGAAGCCATATTTCAGCACCTGTACTCACTAACAATACAATAACAGGCAATGTCCACATCATACATAATGCACCAGGTTTTACTTGGAATCGCCCACCCTCTGAAAAAACTCAAACCTCGGGATCAAGGTCAGTGATTTTAAAACATAAGACGCAGATCTGCAGTGAGTATCGGTATGTGACCGAGTATAACTCACTGCCTGGTGAACATGTGCTGCTTTCTGAGCGCTACATACAACCGCTGATCCTTAAGAGACATAGAGATCAAAAAGAGAGAGAAGAAGAGATCTGCTCCAGTGGAGAGAGCTTCCAGCAGCTCCTCTGCTCCAGGAGCATTGATGACTCTGTCCGGGATCTGAACACTCTGTTCGACACAGATGAGCATGGGATCAGTCCTAGTGCTGTTATACTGCAGGGAAATTCTGGAAACGGGAAATCTTTCACTGTGCAGAAGATCATGATGGACTGGGCATCTGGTGACCTCTACAAAGAGCGGTTTGATGTTGTGTTCCACTTAAAGTGTAAAGAAATTAACCGCATTCTTGCCGAAAAGAGTTTGGCGGAGATCTTGAGCTGCAGTTGTAGTTTAACATCAGATCAGATCTCACAGGTACTACAGCATTCACCAGAGAAGGTGCTCTTCATCATTGATGGATTTGATGAGCTGAGACTCACACCGGATGTTTATGACATATCGCCACACACTGATCTGCTTCAGAAAGCCCCAGCTGAGGTCATTCTTTGTGACCTGCTGAGGGGTCGAATCCTGCCAGAGTCCTTCCTGCTGGTCACTACCAGATCTACAGCCACAGACACACTGAGTAAACTGCTCAAAGGACCTCATCGTTTCTCTGAGATAATTGGTTTCTCTGAGAAGGGGGTGAAGGAGTACTTCCAGAAGTTTTTTCAAATTGAGGAAGTTTTCAGGAAGGCTTATACATTTGTGGAGACAAATGAAACTCTCATCACTGCCTGCTCCATCCCTGTCATCTGCTGGATCATCTGCACAACTATCAAGGAACGATTCAAAATTGGTGCAGATGTAACAAGCGGACTGGGAACCATCACCTCCATCTACGTTGACTTTGTGTCCACTCTGCTGGATCATCACTGCCAGGGTTTGAGTCAATCCGTCCCGACCCTGCTGAGGAGTCTGGGTCAGCTGGCAGAGAGAGGGATGCTGGAACAGCAAGTCTTGTTTGATGGGAAAAGTGTTTATGAAACAGTTTCAGACCCTGCTGGCAGTCCGTTCCTGTGCAAGTTCCTGTTTAAGAGAAGAATCTACCAGGAGACGATGTTCAGTTTCATGCATCTCAGCTTTCAGGAGTTCTTCACTGCTCTGTACTATGTCCTTCTGGATGAAGAAGAGTCCCAAAGAAAACTCACTCAGCTATATTCCAGTGATAAAAACTCAAGTGATTATCACACTCGTCCTCCACGCTTTGCAGCTGTGGCGCAATTTGCTTTTGGTCTGCTGAATAAGGATGTGAGATGCACACTTGAAACACATGGTCTCTTTGTTCATCCACAAACACAGGCTCATCTGAAAGAATGGATTTTGGAAGAGCTTCAAAGTAATAACATGTATTCGAATAGAGCAGTTTTTTTCCTTCACTGTCTCTATGAACTTCATGAAGAGGACTTTGTGAAAGAAGCTATGGAAGCCTGGAACAGAATTAACACATATGGTGCAGTCCTAAGAGGAACAGACTGCTGGGCCCTGCAGTACTGCGCTCAGTGCGTTCAGTGCATTGAAGAACTGTATCTGAACAGCGGTTTACCATCTGAAATGGTGCTTATGATTCTGCCTTTTTTCCACAAGTTCAAGAGAGTAAGCTATGATCTCTGCTTCCTATTAAGAAATTCACTTCAGTCAATCAGTGAAGAGCTAAACAGTATTCAAATATGTCCTCCATGGTATAGAAACCCAGGAGCATCTTTGCGATTACTCATTCTCACCTTTCCAAACGAAGATCTAAAAAACTTAGACTGGATCAGATTTTCTCAGAAAATTCACCAAGGAGATTCAGATGCATTGATGTCTGTTGTCTATTCTTTCTCTAAACTGAAAAGGATAGAAATAGAAGTGGACTGTCTAAGTGAGATGTGGTCTGTTTGGACCCTCCAAATCATCCAGAAGTGCTCCAGTCTAACAGAACTCGTGTTCATGTGCAAAAAACGCAAATGCACACGTTATGAGGACTATCATCTTCGCTGCAACCAGAAGGTGAAGATTCATCTGAATTCCCAGGGCTTTTCTATGGAGATTATGTGAAAGTAAGTTAATACTAAGATTAACAGAATGCCACTTGCACCAGTAACCATGAGAACTGTAATGATGATGATGTAATATGATATGAGTATATTAAATGTACAAGCTTTCAGTGCAATAGCATATAATCATAGTGTGCAGTGTGGATCTTAACCTAATGGTCAGCTCTGTATACAGACATATTCTACATGACTTATCATGTGTTTTATCTCTTGTCTCTCTCCATTTCTAAGGCCCTTGTTTTGTAACTGATGGTACAGCTTGATAACCAGAAGAAACTGCCAAAGCAGCATCTTTACCTAGAGCTGTGGATGGGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45735 lncRNA downstream 11256 6753816 ~ 6754017 (-) True G40349
TU45695 lncRNA downstream 84024 6680036 ~ 6681249 (-) True G40316
TU45692 lncRNA downstream 113355 6651688 ~ 6651918 (-) True G40313
TU45689 lncRNA downstream 116905 6648152 ~ 6648368 (-) True G40310
TU45602 lncRNA downstream 210330 6508611 ~ 6554943 (-) True G40228
TU45770 lncRNA upstream 166262 6938427 ~ 6938654 (-) True G40378
TU45771 lncRNA upstream 166926 6939091 ~ 6939294 (-) True G40379
TU45775 lncRNA upstream 170946 6943111 ~ 6945572 (-) True G40382
TU45812 lncRNA upstream 221152 6993317 ~ 7090894 (-) True G40403
TU45818 lncRNA upstream 225417 6997582 ~ 6998343 (-) False G40407
CI01000005_06721142_06724797.mRNA mRNA downstream 40440 6720908 ~ 6724833 (-) True CI01000005_06721142_06724797
CI01000005_06655061_06664135.mRNA mRNA downstream 100933 6654881 ~ 6664340 (-) True CI01000005_06655061_06664135
CI01000005_06623484_06646729.mRNA mRNA downstream 118544 6623344 ~ 6646729 (-) True CI01000005_06623484_06646729
CI01000005_06609686_06619218.mRNA mRNA downstream 146055 6609642 ~ 6619218 (-) True CI01000005_06609686_06619218
CI01000005_06567196_06595338.mRNA mRNA downstream 167834 6566909 ~ 6597439 (-) True CI01000005_06567196_06595338
CI01000005_06772433_06793278.mRNA mRNA upstream 268 6772433 ~ 6793278 (-) True CI01000005_06772433_06793278
CI01000005_06815976_06894322.mRNA mRNA upstream 43213 6815378 ~ 6894585 (-) True CI01000005_06815976_06894322
CI01000005_07018058_07025374.mRNA mRNA upstream 244676 7016841 ~ 7025374 (-) True CI01000005_07018058_07025374
CI01000005_07035672_07037203.mRNA mRNA upstream 262612 7034777 ~ 7037276 (-) True CI01000005_07035672_07037203
CI01000005_07052874_07068345.mRNA mRNA upstream 280565 7052730 ~ 7068377 (-) True CI01000005_07052874_07068345
TU45564 other downstream 281784 6480689 ~ 6483489 (-) True G40190
TU44763 other downstream 930734 5833792 ~ 5834539 (-) True G39515
TU44762 other downstream 930881 5833792 ~ 5834392 (-) False G39515
TU43542 other downstream 2364163 4381238 ~ 4401110 (-) True G38415
TU43637 other downstream 2559065 4204845 ~ 4206208 (-) True G38510
TU45920 other upstream 423630 7195795 ~ 7196428 (-) True G40487
TU46013 other upstream 754056 7526221 ~ 7532148 (-) True G40540

Expression Profile