RNA id: CI01000005_06655061_06664135.mRNA


Basic Information

Item Value
RNA id CI01000005_06655061_06664135.mRNA
length 1180
RNA type mRNA
GC content 0.46
exon number 8
gene id CI01000005_06655061_06664135
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 6654881 ~ 6664340 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTACAATTTTGTTTCCATATTTATTGTTTCTTCCTTCAAACATTACTTCTGTAACTTTTTCTGTTGCAGTTCCTGTATAAATCCGTATATGCCAACTCTTCTCAGTTTGTGTAAATGCCCCTTTTTTGTGGTACATATGCCACTTCAGATGCAGCTTCTGTGCCACTTTTGCAGTGTAAACAGCCGACGCTTGTTTCTTTCAGATGTCAGACGGTCTCCTGATGGAGGTATGTGTGGACTCAGTTGAGTCAGCCATAAACGCAGAAAGGGGAGGTCTGTTGCAGGTGGTCAAAGAGAACGTGCGGATCCCGGTGTATGTCATGATTCGACCCCGTGGAGGAGACTTCCTGTACTCGGACTGGGAGGTGGAGGTGATGAAGAGGGATATTGAGCAGATGAAGAGTCACAGAGCGGACGGGCTGGTGTTCGGAGCGCTGACAGAAGACGGACGTGTGGATACTGAGCTCTGCATGGAACTTCTGGCGGTTTCTCGACCTTTACCAGTTACGTTTCACAGAGCCTTTGATATGGTCCACGATCCAGTGGTTGCGTTAGAAGCTCTGGTCTCGCTGGGCTTTGAGAGGATTCTGACCAGTGGTTGTGACAGCTCTGCTCTGGAAGGTTTACCTGTAATTAAACGACTGGTGGAACAGCTTAACAACATGTGCGAATGCCAACATGTTTTGGAATCCGCTGTAGGCAATGGGAGATTTATTCAGGTCTCATGTTGGGCAAGTCTATTTTTGTGGCATGCAAAAGGCAGAATAGCAATAATGCCAGGCGGTGGAATCACCGAAAGAAACCTTCAGAGGATTCTAGAAGGCTCCGGCTCTCAGGAGTTCCACTGCTCTGCTCGCTCCAGCAAGGACTCCAGCATGAAGTTTAGGAATTGTAATGTCAGTATGGGAGGCTCTCTGTCTGTCCCAGAATATGCAGTAAAAGTGGCTGATGTGACTAAAGTACGAACACTGAACGCCATTGCGAGGAACACACTCTAGGATACATGGAGAATCCTGTACAGTGATACCAGAGGGAAACTCCTGTAATTCTTCAATAAGGATATTCCTGTGATGACAGCTTTTGTTGGAACAAAATGAAAAACTTTAAAATGTCAAGATCAGCAGCACTGTGTTTTGTTTAGCTTTTGACATTGTGATGATTTGCAGGCGTGAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45692 lncRNA downstream 2963 6651688 ~ 6651918 (-) True G40313
TU45689 lncRNA downstream 6513 6648152 ~ 6648368 (-) True G40310
TU45602 lncRNA downstream 99938 6508611 ~ 6554943 (-) True G40228
TU45605 lncRNA downstream 113495 6538833 ~ 6539939 (-) True G40231
TU45558 lncRNA downstream 178004 6398299 ~ 6476877 (-) False G40188
TU45695 lncRNA upstream 15696 6680036 ~ 6681249 (-) True G40316
TU45735 lncRNA upstream 89476 6753816 ~ 6754017 (-) True G40349
TU45770 lncRNA upstream 274087 6938427 ~ 6938654 (-) True G40378
TU45771 lncRNA upstream 274751 6939091 ~ 6939294 (-) True G40379
TU45775 lncRNA upstream 278771 6943111 ~ 6945572 (-) True G40382
CI01000005_06623484_06646729.mRNA mRNA downstream 8152 6623344 ~ 6646729 (-) True CI01000005_06623484_06646729
CI01000005_06609686_06619218.mRNA mRNA downstream 35663 6609642 ~ 6619218 (-) True CI01000005_06609686_06619218
CI01000005_06567196_06595338.mRNA mRNA downstream 57442 6566909 ~ 6597439 (-) True CI01000005_06567196_06595338
CI01000005_06518032_06559301.mRNA mRNA downstream 95445 6518032 ~ 6559436 (-) False CI01000005_06518032_06559301
CI01000005_06507647_06517258.mRNA mRNA downstream 137315 6507157 ~ 6517566 (-) True CI01000005_06507647_06517258
CI01000005_06721142_06724797.mRNA mRNA upstream 56568 6720908 ~ 6724833 (-) True CI01000005_06721142_06724797
CI01000005_06765592_06772165.mRNA mRNA upstream 100933 6765273 ~ 6772165 (-) True CI01000005_06765592_06772165
CI01000005_06772433_06793278.mRNA mRNA upstream 108093 6772433 ~ 6793278 (-) True CI01000005_06772433_06793278
CI01000005_06815976_06894322.mRNA mRNA upstream 151038 6815378 ~ 6894585 (-) True CI01000005_06815976_06894322
CI01000005_07018058_07025374.mRNA mRNA upstream 352501 7016841 ~ 7025374 (-) True CI01000005_07018058_07025374
TU45564 other downstream 171392 6480689 ~ 6483489 (-) True G40190
TU44763 other downstream 820342 5833792 ~ 5834539 (-) True G39515
TU44762 other downstream 820489 5833792 ~ 5834392 (-) False G39515
TU43542 other downstream 2253771 4381238 ~ 4401110 (-) True G38415
TU43637 other downstream 2448673 4204845 ~ 4206208 (-) True G38510
TU45920 other upstream 531455 7195795 ~ 7196428 (-) True G40487
TU46013 other upstream 861881 7526221 ~ 7532148 (-) True G40540

Expression Profile