RNA id: TU45891


Basic Information

Item Value
RNA id TU45891
length 211
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G40472
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 7155361 ~ 7155615 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAACAGACAGGCAGACAGGATAGTAATGCTCGGAATTGTAACACAGGGTAAACAAGACTTCGCAATGAGGTAGTGTGTGAGTGAGTCTTAAATAGTCCAGATAATAGGCTACAGGTGTATGTGGCAAATGATGATTGGTGTGGAGTGTGCATGTGACAGGCAGGGAGGATTATGGGAAGTGTAGTCCAGGAACTGACAGGAATCGTGACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45812 lncRNA downstream 64467 6993317 ~ 7090894 (-) True G40403
TU45804 lncRNA downstream 90061 7060587 ~ 7065300 (-) True G40402
TU45820 lncRNA downstream 155489 6999253 ~ 6999872 (-) True G40408
TU45818 lncRNA downstream 157018 6997582 ~ 6998343 (-) False G40407
TU45819 lncRNA downstream 157018 6997621 ~ 6998343 (-) True G40407
TU45930 lncRNA upstream 64396 7220011 ~ 7220359 (-) True G40497
TU45932 lncRNA upstream 66992 7222607 ~ 7222893 (-) True G40499
TU45936 lncRNA upstream 75991 7231606 ~ 7231852 (-) True G40503
TU45956 lncRNA upstream 128106 7283721 ~ 7284935 (-) False G40518
TU45954 lncRNA upstream 128360 7283975 ~ 7284935 (-) False G40518
CI01000005_07143500_07144465.mRNA mRNA downstream 10796 7143482 ~ 7144565 (-) True CI01000005_07143500_07144465
CI01000005_07111233_07112234.mRNA mRNA downstream 43095 7110722 ~ 7112266 (-) True CI01000005_07111233_07112234
CI01000005_07093538_07094533.mRNA mRNA downstream 60792 7093482 ~ 7094569 (-) True CI01000005_07093538_07094533
CI01000005_07052874_07068345.mRNA mRNA downstream 86984 7052730 ~ 7068377 (-) True CI01000005_07052874_07068345
CI01000005_07035672_07037203.mRNA mRNA downstream 118085 7034777 ~ 7037276 (-) True CI01000005_07035672_07037203
CI01000005_07190084_07218097.mRNA mRNA upstream 33981 7189596 ~ 7218133 (-) True CI01000005_07190084_07218097
CI01000005_07355833_07360372.mRNA mRNA upstream 200218 7355833 ~ 7360372 (-) True CI01000005_07355833_07360372
CI01000005_07373961_07374634.mRNA mRNA upstream 217795 7373410 ~ 7374634 (-) True CI01000005_07373961_07374634
CI01000005_07398684_07399164.mRNA mRNA upstream 242872 7398487 ~ 7399164 (-) True CI01000005_07398684_07399164
CI01000005_07436839_07437813.mRNA mRNA upstream 280450 7436065 ~ 7438424 (-) True CI01000005_07436839_07437813
TU45564 other downstream 671872 6480689 ~ 6483489 (-) True G40190
TU44763 other downstream 1320822 5833792 ~ 5834539 (-) True G39515
TU44762 other downstream 1320969 5833792 ~ 5834392 (-) False G39515
TU43542 other downstream 2754251 4381238 ~ 4401110 (-) True G38415
TU43637 other downstream 2949153 4204845 ~ 4206208 (-) True G38510
TU45920 other upstream 40180 7195795 ~ 7196428 (-) True G40487
TU46013 other upstream 370606 7526221 ~ 7532148 (-) True G40540

Expression Profile